The 2.0 version of rSNPBase

Variant report

Variant rs56378631
Chromosome Location chr17:43496465-43496466
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43484400-43502600 Weak transcription Fetal Lung lung
3 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
8 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
10 chr17:43490200-43505600 Weak transcription Thymus Thymus
11 chr17:43490600-43501800 Weak transcription Small Intestine intestine
12 chr17:43491800-43500000 Weak transcription HepG2 liver
13 chr17:43492000-43501400 Weak transcription Placenta Placenta
14 chr17:43492800-43498200 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr17:43492800-43501200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr17:43493000-43501600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr17:43493200-43499600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr17:43493200-43500800 Weak transcription A549 lung
19 chr17:43493200-43503800 Weak transcription Spleen Spleen
20 chr17:43493400-43501200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr17:43495800-43496600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
22 chr17:43495800-43496600 Genic enhancers Fetal Intestine Small intestine
23 chr17:43495800-43496600 Enhancers Right Ventricle heart
24 chr17:43495800-43496600 Enhancers Stomach Mucosa stomach
25 chr17:43495800-43501800 Strong transcription Monocytes-CD14+_RO01746 blood
26 chr17:43496000-43496600 Strong transcription Primary monocytes fromperipheralblood blood
27 chr17:43496000-43496600 Genic enhancers Fetal Intestine Large intestine
28 chr17:43496000-43496600 Enhancers Left Ventricle heart
29 chr17:43496000-43496600 Enhancers Right Atrium heart
30 chr17:43496000-43496600 Genic enhancers Sigmoid Colon Sigmoid Colon
31 chr17:43496200-43496600 Enhancers Esophagus oesophagus
32 chr17:43496400-43496600 Genic enhancers Duodenum Mucosa Duodenum
33 chr17:43496400-43497000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr17:43496400-43497200 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr17:43496400-43498400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr17:43496400-43500600 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr17:43496400-43500800 Weak transcription Hela-S3 cervix
38 chr17:43496400-43501000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr17:43496400-43501000 Weak transcription Colonic Mucosa Colon
40 chr17:43496400-43501400 Weak transcription H1 Cell Line embryonic stem cell
41 chr17:43496400-43501400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr17:43496400-43501400 Weak transcription Gastric stomach
43 chr17:43496400-43501400 Weak transcription Lung lung
44 chr17:43496400-43502200 Weak transcription NHEK skin

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Last update: Aug 31, 2015