Variant report

Variant	rs563887407
Chromosome Location	chr19:43004766-43004767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1057390	chr19:43003323-43173028	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42998000-43004800	Enhancers	Fetal Intestine Large	intestine
2	chr19:43001800-43009400	Weak transcription	Aorta	Aorta
3	chr19:43002000-43008600	Weak transcription	Right Ventricle	heart
4	chr19:43002200-43015000	Weak transcription	Spleen	Spleen
5	chr19:43002200-43025200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr19:43002400-43022400	Weak transcription	Lung	lung
7	chr19:43002600-43010200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr19:43002800-43014800	Weak transcription	Adipose Nuclei	Adipose
9	chr19:43002800-43014800	Weak transcription	Left Ventricle	heart
10	chr19:43002800-43023000	Weak transcription	Gastric	stomach
11	chr19:43003000-43005400	Enhancers	HepG2	liver
12	chr19:43003000-43013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr19:43003200-43008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr19:43003200-43014600	Weak transcription	Primary B cells from cord blood	blood
15	chr19:43003200-43030600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr19:43003400-43009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr19:43003400-43012800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr19:43003400-43014600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr19:43003400-43015200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr19:43003400-43019000	Weak transcription	Placenta	Placenta
21	chr19:43003400-43028400	Weak transcription	Esophagus	oesophagus
22	chr19:43003400-43029400	Weak transcription	Small Intestine	intestine
23	chr19:43003600-43011800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr19:43003600-43012200	Weak transcription	Liver	Liver
25	chr19:43003600-43012600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:43003600-43013000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr19:43003600-43015000	Weak transcription	Colonic Mucosa	Colon
28	chr19:43003600-43015600	Weak transcription	Brain Anterior Caudate	brain
29	chr19:43003800-43015000	Weak transcription	Fetal Intestine Small	intestine
30	chr19:43004000-43014600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr19:43004600-43015000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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