Variant report

Variant	rs563937852
Chromosome Location	chr1:93426196-93426197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93425993..93428373-chr1:93433568..93436256,2	MCF-7	breast:
2	chr1:93426062..93426867-chr1:93459810..93460332,2	MCF-7	breast:
3	chr1:93296297..93299381-chr1:93425183..93428047,4	K562	blood:
4	chr1:93324139..93325155-chr1:93425615..93426899,9	MCF-7	breast:
5	chr1:93425058..93429733-chr1:93431759..93435608,8	K562	blood:
6	chr1:93409434..93411659-chr1:93423338..93426325,2	K562	blood:
7	chr1:93378943..93379622-chr1:93425899..93426864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122406	Chromatin interaction
ENSG00000252121	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	esv3339713	chr1:93425789-93428737	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93423200-93426200	Weak transcription	Gastric	stomach
2	chr1:93423200-93426200	Weak transcription	Spleen	Spleen
3	chr1:93425200-93428000	Active TSS	Brain Hippocampus Middle	brain
4	chr1:93425200-93428000	Active TSS	NHDF-Ad	bronchial
5	chr1:93425200-93428200	Active TSS	Liver	Liver
6	chr1:93425200-93428200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr1:93425200-93428200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:93425200-93428200	Active TSS	Brain Substantia Nigra	brain
9	chr1:93425400-93426200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr1:93425400-93428200	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr1:93425400-93428200	Active TSS	Brain Angular Gyrus	brain
12	chr1:93425400-93428200	Active TSS	Brain Anterior Caudate	brain
13	chr1:93425600-93426200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:93425600-93426200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:93425600-93426200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:93425600-93426200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr1:93425600-93426400	Flanking Active TSS	Primary B cells from peripheral blood	blood
18	chr1:93425600-93426400	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr1:93425600-93426400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
20	chr1:93425600-93426400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:93425600-93426400	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr1:93425600-93426400	Flanking Active TSS	Fetal Thymus	thymus
23	chr1:93425600-93426400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr1:93425600-93426400	Flanking Active TSS	Dnd41	blood
25	chr1:93425600-93426400	Flanking Active TSS	Hela-S3	cervix
26	chr1:93425600-93426400	Flanking Active TSS	HMEC	breast
27	chr1:93425600-93426600	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr1:93425600-93426600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:93425600-93426600	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr1:93425600-93426600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
31	chr1:93425600-93426600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr1:93425600-93427800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr1:93425600-93427800	Active TSS	Brain Cingulate Gyrus	brain
34	chr1:93425600-93427800	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr1:93425600-93428000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:93425600-93428000	Active TSS	Fetal Brain Female	brain
37	chr1:93425600-93428000	Active TSS	Pancreas	Pancrea
38	chr1:93425600-93428200	Active TSS	Colonic Mucosa	Colon
39	chr1:93425600-93428200	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr1:93425600-93428400	Active TSS	Aorta	Aorta
41	chr1:93425800-93426200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
42	chr1:93425800-93426200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
43	chr1:93425800-93426200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
44	chr1:93425800-93426200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr1:93425800-93426200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:93425800-93426200	Flanking Active TSS	Fetal Lung	lung
47	chr1:93425800-93426200	Enhancers	Placenta Amnion	Placenta Amnion
48	chr1:93425800-93426200	Flanking Active TSS	Osteobl	bone
49	chr1:93425800-93426400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
50	chr1:93425800-93426400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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