Variant report

Variant	rs56394926
Chromosome Location	chr11:56280110-56280111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs17541821	0.86[EUR][1000 genomes]
rs17541876	0.86[EUR][1000 genomes]
rs17546536	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17548679	0.86[EUR][1000 genomes]
rs17548700	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17549606	1.00[AFR][1000 genomes]
rs17627302	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17628586	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17628691	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17629033	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17629218	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1807254	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55706115	0.86[EUR][1000 genomes]
rs55771448	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55874240	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56077409	0.86[EUR][1000 genomes]
rs56078926	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56163075	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901983	0.92[EUR][1000 genomes]
rs61902021	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902022	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902171	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61902203	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61902209	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61902863	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902883	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902885	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902915	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902916	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61902921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61903268	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61903273	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61903306	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61903313	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61903347	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61903478	0.82[EUR][1000 genomes]
rs61903482	0.83[EUR][1000 genomes]
rs61903483	0.83[EUR][1000 genomes]
rs61903484	0.86[EUR][1000 genomes]
rs61903485	0.86[EUR][1000 genomes]
rs61903486	0.86[EUR][1000 genomes]
rs61903487	0.86[EUR][1000 genomes]
rs61903530	0.84[EUR][1000 genomes]
rs61903531	0.84[EUR][1000 genomes]
rs61903536	0.84[EUR][1000 genomes]
rs61903537	0.84[EUR][1000 genomes]
rs61903541	0.84[EUR][1000 genomes]
rs61904062	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904063	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61904064	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61904562	1.00[AFR][1000 genomes]
rs61904563	1.00[AFR][1000 genomes]
rs61904564	1.00[AFR][1000 genomes]
rs61904565	1.00[AFR][1000 genomes]
rs6591380	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7103598	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7106248	0.86[EUR][1000 genomes]
rs7114870	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7121384	0.86[EUR][1000 genomes]
rs7121385	0.86[EUR][1000 genomes]
rs7121991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124023	0.86[EUR][1000 genomes]
rs7126549	0.94[EUR][1000 genomes]
rs7130906	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7951506	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv975185	chr11:56268021-56280681	Enhancers Weak transcription	TF binding region	3 gene(s)	inside rSNPs	n/a
6	nsv972913	chr11:56277278-56280681	Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
7	nsv975928	chr11:56279445-56280681	Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56279800-56281400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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