Variant report

Variant	rs56395277
Chromosome Location	chr13:110392475-110392476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110391823..110394332-chr13:110394549..110396168,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11840368	0.89[AFR][1000 genomes]
rs1550043	1.00[EUR][1000 genomes]
rs41275080	1.00[EUR][1000 genomes]
rs55836500	1.00[EUR][1000 genomes]
rs56140757	0.89[AFR][1000 genomes]
rs57201472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58021650	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7320328	1.00[EUR][1000 genomes]
rs7323744	1.00[EUR][1000 genomes]
rs7327695	1.00[EUR][1000 genomes]
rs73606279	1.00[EUR][1000 genomes]
rs73612884	1.00[EUR][1000 genomes]
rs73612888	1.00[EUR][1000 genomes]
rs73612890	1.00[EUR][1000 genomes]
rs73612892	1.00[EUR][1000 genomes]
rs73612896	1.00[EUR][1000 genomes]
rs73612897	1.00[EUR][1000 genomes]
rs73612899	1.00[EUR][1000 genomes]
rs73615005	1.00[EUR][1000 genomes]
rs74123726	0.91[AFR][1000 genomes]
rs9583434	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110386000-110396200	Weak transcription	Gastric	stomach
2	chr13:110386200-110393000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:110388800-110392600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:110389000-110395600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:110390200-110396600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:110390200-110396800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:110390400-110396200	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:110390400-110396400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:110390600-110392600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:110390600-110395600	Weak transcription	Dnd41	blood
11	chr13:110390600-110396000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:110390600-110396400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:110390800-110402200	Weak transcription	HSMM	muscle
14	chr13:110391000-110395800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:110391000-110396000	Weak transcription	Fetal Heart	heart
16	chr13:110391000-110396400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:110391200-110395600	Weak transcription	Placenta	Placenta
18	chr13:110391200-110402600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr13:110391200-110404400	Weak transcription	HSMMtube	muscle
20	chr13:110391800-110392600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:110391800-110395400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:110391800-110395400	Weak transcription	HMEC	breast
23	chr13:110392200-110396200	Weak transcription	Fetal Brain Male	brain
24	chr13:110392400-110392800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr13:110392400-110392800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:110392400-110393200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr13:110392400-110393200	Enhancers	HUVEC	blood vessel
28	chr13:110392400-110393400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links