Variant report

Variant	rs56397503
Chromosome Location	chr13:96132416-96132417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16951257	1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	1.00[EUR][1000 genomes]
rs4297568	1.00[AMR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55649836	1.00[EUR][1000 genomes]
rs55671956	1.00[EUR][1000 genomes]
rs58386476	1.00[EUR][1000 genomes]
rs61645359	1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	1.00[EUR][1000 genomes]
rs74109006	1.00[EUR][1000 genomes]
rs74109007	1.00[EUR][1000 genomes]
rs74109010	1.00[EUR][1000 genomes]
rs74109011	1.00[EUR][1000 genomes]
rs74109012	1.00[EUR][1000 genomes]
rs74109013	1.00[EUR][1000 genomes]
rs74109014	1.00[EUR][1000 genomes]
rs74109015	1.00[EUR][1000 genomes]
rs74109016	1.00[EUR][1000 genomes]
rs74109017	1.00[EUR][1000 genomes]
rs74109018	1.00[EUR][1000 genomes]
rs74109019	1.00[EUR][1000 genomes]
rs74109020	1.00[EUR][1000 genomes]
rs74109021	1.00[EUR][1000 genomes]
rs74109022	1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]
rs9302057	1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96127800-96144600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:96130600-96133400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:96131000-96133400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr13:96131200-96132600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:96131200-96132600	Weak transcription	Pancreas	Pancrea
6	chr13:96131200-96132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:96131200-96133000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:96131200-96133000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:96131200-96133200	Weak transcription	NHDF-Ad	bronchial
10	chr13:96131200-96133600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:96131200-96134600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr13:96131200-96137200	Weak transcription	Aorta	Aorta
13	chr13:96131200-96137200	Weak transcription	Right Atrium	heart
14	chr13:96131400-96132600	Weak transcription	Spleen	Spleen
15	chr13:96131400-96132800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr13:96131400-96133000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:96131400-96133000	Weak transcription	Osteobl	bone
18	chr13:96131400-96133200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:96131400-96133200	Weak transcription	A549	lung
20	chr13:96131400-96133800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr13:96131400-96134200	Enhancers	Primary hematopoietic stem cells	blood
22	chr13:96131800-96133000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr13:96131800-96133000	Enhancers	K562	blood
24	chr13:96131800-96133800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:96131800-96133800	Enhancers	HUVEC	blood vessel
26	chr13:96132000-96133600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:96132400-96132600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:96132400-96133800	Enhancers	GM12878-XiMat	blood
29	chr13:96132400-96134200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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