Variant report

Variant	rs56397729
Chromosome Location	chr7:104478285-104478286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56007018	1.00[AMR][1000 genomes]
rs57437921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834400	1.00[AMR][1000 genomes]
rs58052615	1.00[AMR][1000 genomes]
rs58436549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58652912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58727441	1.00[AMR][1000 genomes]
rs59672048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965211	1.00[AMR][1000 genomes]
rs60649764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60711291	1.00[AMR][1000 genomes]
rs60977282	1.00[AMR][1000 genomes]
rs73417640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417643	1.00[AMR][1000 genomes]
rs73417647	1.00[AMR][1000 genomes]
rs73417652	1.00[AMR][1000 genomes]
rs73417661	1.00[AMR][1000 genomes]
rs73417662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417669	1.00[AMR][1000 genomes]
rs73417674	1.00[AMR][1000 genomes]
rs73417688	0.81[AFR][1000 genomes]
rs73419733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419744	1.00[AFR][1000 genomes]
rs73419746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419776	1.00[AMR][1000 genomes]
rs73419784	1.00[AMR][1000 genomes]
rs73419799	1.00[AMR][1000 genomes]
rs73419801	1.00[AMR][1000 genomes]
rs73421715	1.00[AMR][1000 genomes]
rs73421732	1.00[AMR][1000 genomes]
rs73714148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73714170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1028479	chr7:104409391-104479087	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv437560	chr7:104461487-104482321	Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026072	chr7:104463733-104478575	Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1022090	chr7:104463733-104478718	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1022694	chr7:104465629-104478575	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104440400-104482400	Weak transcription	Fetal Intestine Small	intestine
2	chr7:104466000-104486800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104477800-104478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:104477800-104478600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:104477800-104479000	Weak transcription	Adipose Nuclei	Adipose
7	chr7:104478200-104481400	Weak transcription	Fetal Intestine Large	intestine

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