Variant report

Variant	rs56402506
Chromosome Location	chr13:87869545-87869546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87863872..87866433-chr13:87868902..87871110,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11618967	1.00[ASN][1000 genomes]
rs16951130	1.00[ASN][1000 genomes]
rs16951137	1.00[ASN][1000 genomes]
rs55756093	1.00[ASN][1000 genomes]
rs56198489	1.00[ASN][1000 genomes]
rs56204352	1.00[ASN][1000 genomes]
rs56723125	1.00[ASN][1000 genomes]
rs57386857	1.00[ASN][1000 genomes]
rs58556290	1.00[EUR][1000 genomes]
rs58594104	1.00[ASN][1000 genomes]
rs58658894	1.00[ASN][1000 genomes]
rs58716013	1.00[ASN][1000 genomes]
rs59220340	1.00[EUR][1000 genomes]
rs59760565	1.00[ASN][1000 genomes]
rs59897361	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60006527	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60032361	1.00[ASN][1000 genomes]
rs60048216	1.00[ASN][1000 genomes]
rs60680591	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60842880	1.00[ASN][1000 genomes]
rs60902327	1.00[EUR][1000 genomes]
rs61192808	1.00[ASN][1000 genomes]
rs61579481	1.00[ASN][1000 genomes]
rs73560623	1.00[ASN][1000 genomes]
rs73562438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73562440	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73562442	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73562447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562464	0.97[EUR][1000 genomes]
rs73562466	1.00[EUR][1000 genomes]
rs73562469	1.00[EUR][1000 genomes]
rs73565478	1.00[ASN][1000 genomes]
rs73566067	1.00[ASN][1000 genomes]
rs73567603	1.00[ASN][1000 genomes]
rs74103203	1.00[ASN][1000 genomes]
rs74103209	1.00[ASN][1000 genomes]
rs74103210	1.00[ASN][1000 genomes]
rs74103212	1.00[ASN][1000 genomes]
rs74103272	1.00[ASN][1000 genomes]
rs74103275	1.00[ASN][1000 genomes]
rs74103296	1.00[ASN][1000 genomes]
rs74103302	1.00[ASN][1000 genomes]
rs74105610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105957	1.00[ASN][1000 genomes]
rs74105959	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045687	chr13:87822969-88114685	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv541860	chr13:87822969-88114685	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv930999	chr13:87831662-88143592	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1047914	chr13:87835419-87909531	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1043448	chr13:87835419-88140970	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv517795	chr13:87836852-87893390	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv916254	chr13:87856806-88107725	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87860400-87875600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:87869000-87869600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:87869400-87869600	Enhancers	HUES48 Cell Line	embryonic stem cell

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