Variant report

Variant	rs56406716
Chromosome Location	chr1:93155863-93155864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93154026..93155990-chr1:93160380..93162982,2	K562	blood:
2	chr1:93155607..93158060-chr1:93158648..93160493,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56172716	0.85[AFR][1000 genomes]
rs59459727	0.85[AFR][1000 genomes]
rs60842823	0.88[AFR][1000 genomes]
rs61259042	0.88[AFR][1000 genomes]
rs74101310	0.97[AFR][1000 genomes]
rs74102903	1.00[AMR][1000 genomes]
rs74102948	0.85[AFR][1000 genomes]
rs74102953	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:93098400-93205400	Weak transcription	NHLF	lung
3	chr1:93101600-93163600	Weak transcription	Colonic Mucosa	Colon
4	chr1:93102000-93157600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:93120000-93171400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:93121200-93157400	Weak transcription	HUVEC	blood vessel
7	chr1:93121400-93159000	Weak transcription	NH-A	brain
8	chr1:93121400-93162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:93121600-93166000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:93122000-93163200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:93122800-93169400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:93123000-93158600	Weak transcription	HSMMtube	muscle
13	chr1:93123200-93157800	Weak transcription	Brain Anterior Caudate	brain
14	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
15	chr1:93123600-93158600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:93123600-93160200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:93123600-93160800	Weak transcription	Fetal Brain Male	brain
18	chr1:93123600-93161400	Weak transcription	Esophagus	oesophagus
19	chr1:93123600-93162200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:93123600-93162600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:93123600-93166800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
23	chr1:93123600-93213400	Weak transcription	Gastric	stomach
24	chr1:93123800-93160400	Weak transcription	Right Ventricle	heart
25	chr1:93123800-93162400	Weak transcription	Fetal Kidney	kidney
26	chr1:93124000-93160000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:93126800-93159200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:93132000-93164600	Weak transcription	Pancreas	Pancrea
29	chr1:93136000-93164600	Weak transcription	NHDF-Ad	bronchial
30	chr1:93138000-93160600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:93138200-93159000	Weak transcription	Primary B cells from cord blood	blood
32	chr1:93138400-93161600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:93141400-93156200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:93142400-93171000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:93145600-93157600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:93146400-93156400	Weak transcription	HMEC	breast
37	chr1:93146400-93164800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:93146600-93157800	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:93146600-93175600	Weak transcription	NHEK	skin
40	chr1:93148000-93166800	Weak transcription	K562	blood
41	chr1:93148400-93160000	Weak transcription	HSMM	muscle
42	chr1:93148600-93158600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr1:93148600-93171000	Weak transcription	Hela-S3	cervix
44	chr1:93152600-93159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:93152600-93167000	Weak transcription	Primary T cells from cord blood	blood
46	chr1:93153200-93165000	Strong transcription	Liver	Liver
47	chr1:93153400-93156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:93153400-93170200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr1:93153800-93156200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:93153800-93156600	Strong transcription	Fetal Intestine Large	intestine

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