Variant report

Variant	rs56411124
Chromosome Location	chr3:69419233-69419234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62254082	0.93[AFR][1000 genomes]
rs7635675	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv520818	chr3:69401248-69421495	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2760780	chr3:69413876-69513947	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69413800-69419400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:69416600-69420400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:69416800-69419800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:69416800-69420400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr3:69416800-69420600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:69417000-69419400	Enhancers	Primary B cells from cord blood	blood
7	chr3:69417000-69420600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:69417000-69420600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:69417200-69419400	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:69417200-69419400	Enhancers	Brain Hippocampus Middle	brain
11	chr3:69417200-69419400	Enhancers	HSMM	muscle
12	chr3:69417200-69420600	Flanking Active TSS	Dnd41	blood
13	chr3:69417200-69421000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:69417400-69419400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:69417400-69420800	Enhancers	Fetal Lung	lung
16	chr3:69417600-69419400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:69417800-69419400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:69417800-69419400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:69417800-69419400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:69417800-69419400	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:69417800-69419600	Weak transcription	Spleen	Spleen
22	chr3:69417800-69420800	Weak transcription	Aorta	Aorta
23	chr3:69418000-69419400	Weak transcription	Esophagus	oesophagus
24	chr3:69418000-69419400	Weak transcription	Left Ventricle	heart
25	chr3:69418000-69419400	Weak transcription	Lung	lung
26	chr3:69418000-69419400	Enhancers	HSMMtube	muscle
27	chr3:69418600-69419800	Enhancers	Brain Germinal Matrix	brain
28	chr3:69418800-69419400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:69418800-69419400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr3:69418800-69420000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr3:69418800-69420200	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:69418800-69420200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:69418800-69420600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr3:69418800-69421400	Enhancers	Fetal Heart	heart
35	chr3:69419000-69419400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:69419000-69419600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr3:69419000-69419600	Active TSS	NHDF-Ad	bronchial
38	chr3:69419000-69419800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:69419000-69419800	Flanking Active TSS	HMEC	breast
40	chr3:69419000-69419800	Flanking Active TSS	HUVEC	blood vessel
41	chr3:69419000-69419800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr3:69419000-69420000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:69419000-69420000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr3:69419000-69420200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:69419000-69420600	Flanking Active TSS	NHEK	skin
46	chr3:69419000-69421400	Enhancers	Brain Angular Gyrus	brain
47	chr3:69419200-69419400	Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr3:69419200-69419400	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr3:69419200-69419400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr3:69419200-69419400	Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links