Variant report

Variant	rs564379787
Chromosome Location	chr14:56088583-56088584
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56087704..56089549-chr14:56953257..56955747,2	K562	blood:

Variant related genes	Relation type
ENSG00000070269	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	esv3338673	chr14:56088012-56088652	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56077800-56092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
3	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:56079000-56089000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:56079000-56091000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:56079200-56095200	Strong transcription	Primary T cells from cord blood	blood
7	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr14:56080200-56097800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr14:56080600-56091800	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:56081200-56090400	Strong transcription	Adipose Nuclei	Adipose
12	chr14:56081600-56090000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:56082200-56091000	Strong transcription	Placenta	Placenta
14	chr14:56082400-56090200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:56082400-56091800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:56082400-56092000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:56082600-56089600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:56082600-56091800	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:56082800-56090000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:56082800-56090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:56082800-56090400	Strong transcription	Osteobl	bone
22	chr14:56082800-56090600	Strong transcription	NHEK	skin
23	chr14:56082800-56091800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:56083000-56091000	Strong transcription	HUVEC	blood vessel
25	chr14:56083200-56090000	Strong transcription	NH-A	brain
26	chr14:56083800-56089200	Weak transcription	Fetal Heart	heart
27	chr14:56084000-56091800	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr14:56084800-56088600	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr14:56085000-56091000	Strong transcription	Left Ventricle	heart
30	chr14:56085200-56090000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:56086000-56093400	Strong transcription	A549	lung
32	chr14:56086600-56092400	Weak transcription	HMEC	breast
33	chr14:56086800-56094400	Weak transcription	NHDF-Ad	bronchial
34	chr14:56087200-56088600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:56087200-56091800	Strong transcription	Brain Angular Gyrus	brain
36	chr14:56087400-56088600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr14:56087400-56088600	Strong transcription	Brain Anterior Caudate	brain
38	chr14:56087400-56088800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:56087400-56089000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:56087400-56089000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:56087400-56089800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:56087400-56091000	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:56087400-56091200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:56087400-56091600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:56087400-56091800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr14:56087400-56091800	Strong transcription	Fetal Muscle Leg	muscle
47	chr14:56087400-56092000	Strong transcription	Liver	Liver
48	chr14:56087400-56092000	Strong transcription	Fetal Intestine Large	intestine
49	chr14:56087400-56092000	Strong transcription	Fetal Stomach	stomach
50	chr14:56087400-56092800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links