Variant report

Variant	rs564566183
Chromosome Location	chr5:177988975-177988976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLK4-2	chr5:177988845-177989007	NONHSAT105537

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177982200-177990200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:177983200-177991000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:177987200-177989000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:177987200-177989200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:177987200-177989200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:177987200-177989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:177987400-177989000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:177987400-177989200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:177987400-177989200	Enhancers	Fetal Thymus	thymus
10	chr5:177987600-177989200	Enhancers	Fetal Stomach	stomach
11	chr5:177987600-177989200	Enhancers	Dnd41	blood
12	chr5:177987800-177989000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:177987800-177989000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:177987800-177989000	Enhancers	Fetal Lung	lung
15	chr5:177988000-177989200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:177988200-177989200	Enhancers	Fetal Muscle Leg	muscle
17	chr5:177988400-177989200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
18	chr5:177988600-177989200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:177988600-177989200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr5:177988600-177989200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:177988600-177989200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:177988600-177990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:177988600-177990200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr5:177988600-177990200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr5:177988600-177990200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:177988800-177989000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr5:177988800-177989000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:177988800-177989200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr5:177988800-177989200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr5:177988800-177991000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links