Variant report

Variant	rs564768280
Chromosome Location	chr15:76432506-76432507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76405575..76406307-chr15:76431978..76432508,2	MCF-7	breast:
2	chr15:76220909..76222483-chr15:76431367..76432547,6	MCF-7	breast:
3	chr15:76102008..76102960-chr15:76431567..76432789,7	MCF-7	breast:
4	chr15:76349376..76350531-chr15:76431524..76433402,8	MCF-7	breast:
5	chr15:76348835..76350888-chr15:76431511..76432728,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169752	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain
3	chr15:76430600-76432800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:76431000-76432600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:76431000-76433000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:76431200-76432600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:76431200-76432600	Enhancers	Placenta	Placenta
8	chr15:76431200-76432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:76431200-76432800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr15:76431200-76432800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:76431200-76432800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:76431200-76432800	Enhancers	GM12878-XiMat	blood
13	chr15:76431600-76432600	Enhancers	Fetal Thymus	thymus
14	chr15:76431600-76432800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:76431600-76433000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:76431600-76433000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr15:76431800-76432800	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr15:76431800-76433000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr15:76431800-76433200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:76432000-76432600	Enhancers	Right Ventricle	heart
21	chr15:76432000-76432800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:76432000-76432800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:76432000-76432800	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr15:76432000-76432800	Bivalent Enhancer	Fetal Stomach	stomach
25	chr15:76432000-76432800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr15:76432000-76432800	Flanking Active TSS	HUVEC	blood vessel
27	chr15:76432000-76432800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr15:76432000-76433000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:76432000-76433000	Enhancers	Colon Smooth Muscle	Colon
30	chr15:76432000-76433000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr15:76432000-76433000	Enhancers	Left Ventricle	heart
32	chr15:76432000-76433000	Bivalent Enhancer	Stomach Mucosa	stomach
33	chr15:76432000-76433000	Enhancers	NHEK	skin
34	chr15:76432200-76432600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:76432200-76432600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:76432200-76432600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:76432200-76432600	Active TSS	Brain Hippocampus Middle	brain
38	chr15:76432200-76432600	Flanking Active TSS	Right Atrium	heart
39	chr15:76432200-76432600	Enhancers	NHDF-Ad	bronchial
40	chr15:76432200-76432600	Enhancers	Osteobl	bone
41	chr15:76432200-76432800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr15:76432200-76432800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr15:76432200-76432800	Enhancers	Primary hematopoietic stem cells	blood
44	chr15:76432200-76432800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr15:76432200-76432800	Enhancers	Duodenum Mucosa	Duodenum
46	chr15:76432200-76433000	Enhancers	Brain Substantia Nigra	brain
47	chr15:76432200-76433600	Enhancers	Spleen	Spleen
48	chr15:76432400-76432600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr15:76432400-76432600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr15:76432400-76432600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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