Variant report

Variant	rs564976597
Chromosome Location	chr4:87646751-87646752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv508296	chr4:87636350-87667372	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv999120	chr4:87646090-87653014	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3467931	chr4:87646378-87651948	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv3467932	chr4:87646392-87651948	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87592400-87656400	Weak transcription	Adipose Nuclei	Adipose
2	chr4:87594400-87659800	Weak transcription	Ovary	ovary
3	chr4:87595200-87651200	Weak transcription	Fetal Stomach	stomach
4	chr4:87625200-87651600	Weak transcription	Esophagus	oesophagus
5	chr4:87631200-87712200	Weak transcription	Aorta	Aorta
6	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
7	chr4:87635400-87648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:87635600-87651600	Weak transcription	Lung	lung
9	chr4:87636400-87683800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:87637200-87661200	Weak transcription	Pancreas	Pancrea
11	chr4:87639200-87688000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:87639400-87739200	Weak transcription	A549	lung
13	chr4:87640200-87652000	Weak transcription	HMEC	breast
14	chr4:87641600-87660400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:87641800-87648400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:87641800-87683400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:87642000-87651200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:87642000-87651600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:87642000-87651600	Weak transcription	Gastric	stomach
20	chr4:87642000-87655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:87642000-87661000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:87642200-87692600	Weak transcription	NH-A	brain
23	chr4:87642400-87648400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:87642400-87735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:87642600-87650800	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:87642600-87661000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:87642600-87661200	Weak transcription	Brain Germinal Matrix	brain
28	chr4:87642600-87692400	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:87642600-87697600	Weak transcription	Brain Angular Gyrus	brain
30	chr4:87642600-87719200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:87642800-87652200	Weak transcription	Brain Substantia Nigra	brain
32	chr4:87643000-87647000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:87643200-87647800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:87643600-87648600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:87644400-87661200	Weak transcription	Osteobl	bone
36	chr4:87644600-87651400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:87644600-87651400	Weak transcription	Fetal Lung	lung
38	chr4:87644600-87651600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:87644600-87656400	Weak transcription	Brain Anterior Caudate	brain
40	chr4:87644600-87660200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:87644600-87661000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr4:87644600-87680600	Weak transcription	NHLF	lung
43	chr4:87644800-87646800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:87644800-87651400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:87644800-87651600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr4:87644800-87651600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:87644800-87651600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr4:87644800-87651600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:87644800-87651600	Weak transcription	Fetal Intestine Small	intestine
50	chr4:87644800-87655800	Weak transcription	NHEK	skin

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