Variant report

Variant	rs565106088
Chromosome Location	chr20:25678728-25678729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr20:25676527-25679236	GM12878	blood:	n/a	n/a
2	MAX	chr20:25678611-25678858	NB4	blood:	n/a	chr20:25678699-25678709
3	STAT3	chr20:25678658-25678806	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25603699..25606216-chr20:25676779..25679090,3	MCF-7	breast:
2	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:

Variant related genes	Relation type
ZNF337	TF binding region
ENSG00000213742	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3486652	chr20:25678552-25682550	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25676000-25678800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:25676600-25678800	Active TSS	Brain Germinal Matrix	brain
3	chr20:25676600-25679200	Active TSS	GM12878-XiMat	blood
4	chr20:25677800-25678800	Active TSS	Fetal Brain Male	brain
5	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
6	chr20:25678000-25678800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:25678000-25678800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr20:25678000-25678800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:25678000-25678800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr20:25678000-25678800	Enhancers	Brain Angular Gyrus	brain
11	chr20:25678000-25679000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr20:25678000-25679000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr20:25678000-25679000	Flanking Active TSS	Dnd41	blood
14	chr20:25678000-25679600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr20:25678000-25679600	Enhancers	Liver	Liver
16	chr20:25678000-25681600	Weak transcription	Brain Hippocampus Middle	brain
17	chr20:25678000-25687600	Weak transcription	Esophagus	oesophagus
18	chr20:25678400-25678800	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr20:25678400-25678800	Enhancers	Right Atrium	heart
20	chr20:25678400-25678800	Enhancers	NHEK	skin
21	chr20:25678400-25679200	Enhancers	Fetal Brain Female	brain
22	chr20:25678400-25679200	Enhancers	HepG2	liver
23	chr20:25678600-25678800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr20:25678600-25678800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr20:25678600-25678800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr20:25678600-25678800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr20:25678600-25678800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr20:25678600-25678800	Enhancers	Fetal Kidney	kidney
29	chr20:25678600-25678800	Enhancers	Psoas Muscle	Psoas
30	chr20:25678600-25678800	Enhancers	Right Ventricle	heart
31	chr20:25678600-25678800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr20:25678600-25678800	Enhancers	Stomach Mucosa	stomach
33	chr20:25678600-25678800	Enhancers	Thymus	Thymus
34	chr20:25678600-25678800	Enhancers	Spleen	Spleen
35	chr20:25678600-25678800	Flanking Active TSS	A549	lung
36	chr20:25678600-25678800	Enhancers	Hela-S3	cervix
37	chr20:25678600-25678800	Flanking Active TSS	HMEC	breast
38	chr20:25678600-25678800	Enhancers	HSMMtube	muscle

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