Variant report

Variant	rs565404394
Chromosome Location	chr11:17327969-17327970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17326206..17329035-chr11:17373142..17375618,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNJ11-5	chr11:17327447-17328093	l_439_chr11:17315763-17328093_testes

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1799284	chr11:17299390-17343486	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1799280	chr11:17299390-17354775	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv1801731	chr11:17299390-17354775	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv897017	chr11:17318236-17343486	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1843677	chr11:17327038-17337413	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv553582	chr11:17327038-17337413	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1841973	chr11:17327038-17339127	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1851915	chr11:17327038-17343486	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
4	chr11:17299200-17329600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:17299400-17338200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:17299400-17355400	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
9	chr11:17299600-17335000	Weak transcription	Primary B cells from cord blood	blood
10	chr11:17300200-17335000	Weak transcription	Fetal Brain Male	brain
11	chr11:17301600-17350400	Weak transcription	Fetal Heart	heart
12	chr11:17302600-17329600	Weak transcription	K562	blood
13	chr11:17305800-17332400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:17306200-17353000	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:17307600-17328000	Weak transcription	Pancreas	Pancrea
16	chr11:17307800-17333600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:17308200-17335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:17308200-17353600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:17308200-17357600	Weak transcription	HepG2	liver
20	chr11:17308200-17360800	Strong transcription	Fetal Thymus	thymus
21	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:17308400-17335000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:17308400-17335000	Weak transcription	NHLF	lung
24	chr11:17308400-17356800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:17308400-17361600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:17308800-17331800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:17308800-17331800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:17309000-17331200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:17309000-17355600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:17309400-17335200	Weak transcription	Psoas Muscle	Psoas
31	chr11:17309600-17329600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:17312200-17355400	Weak transcription	Fetal Kidney	kidney
33	chr11:17313800-17335400	Weak transcription	HSMMtube	muscle
34	chr11:17314200-17353400	Weak transcription	Stomach Mucosa	stomach
35	chr11:17314400-17335000	Strong transcription	Dnd41	blood
36	chr11:17315200-17335000	Weak transcription	Colonic Mucosa	Colon
37	chr11:17315400-17335000	Weak transcription	Spleen	Spleen
38	chr11:17315400-17353400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:17316000-17335200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:17316000-17360000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:17316000-17361000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:17316400-17347600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:17316600-17349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:17317800-17332200	Strong transcription	Thymus	Thymus
45	chr11:17318200-17331200	Weak transcription	HSMM	muscle
46	chr11:17318400-17329400	Weak transcription	NH-A	brain
47	chr11:17318400-17331600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:17318400-17355600	Weak transcription	Gastric	stomach
49	chr11:17318600-17350400	Weak transcription	Right Ventricle	heart
50	chr11:17318600-17353600	Weak transcription	Brain Anterior Caudate	brain

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