Variant report

Variant	rs565751684
Chromosome Location	chr3:116143287-116143288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116141800-116143400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:116141800-116143400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:116141800-116143600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:116141800-116143600	Enhancers	Brain Germinal Matrix	brain
5	chr3:116141800-116143800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:116142000-116143600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:116142000-116143800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:116142000-116143800	Enhancers	Fetal Lung	lung
9	chr3:116142200-116143800	Enhancers	Fetal Stomach	stomach
10	chr3:116142200-116144200	Enhancers	Stomach Mucosa	stomach
11	chr3:116142600-116143600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:116142800-116143400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:116142800-116143400	Enhancers	NH-A	brain
14	chr3:116142800-116144000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:116142800-116144000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr3:116143000-116143400	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr3:116143000-116143800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:116143000-116144000	Enhancers	Brain Anterior Caudate	brain
19	chr3:116143000-116144200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:116143000-116144200	Enhancers	Brain Angular Gyrus	brain
21	chr3:116143000-116144400	Enhancers	Brain Substantia Nigra	brain
22	chr3:116143200-116143400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:116143200-116144200	Enhancers	Brain Cingulate Gyrus	brain
24	chr3:116143200-116144200	Enhancers	Brain Hippocampus Middle	brain
25	chr3:116143200-116144200	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links