Variant report

Variant	rs565955117
Chromosome Location	chr6:164085255-164085256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3442319	chr6:164084362-164088660	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv3432872	chr6:164085162-164087960	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164057200-164092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164081600-164085400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:164082600-164087600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:164083000-164087000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:164083000-164087800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:164083000-164087800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:164083000-164087800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:164083000-164088200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:164083000-164088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:164083200-164085600	Weak transcription	Brain Germinal Matrix	brain
11	chr6:164083200-164087200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:164083200-164088000	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:164083200-164088400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:164083400-164087800	Weak transcription	GM12878-XiMat	blood
15	chr6:164083600-164086200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:164083800-164088000	Weak transcription	Brain Substantia Nigra	brain
17	chr6:164084000-164086400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:164084200-164086400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:164084400-164088000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:164084800-164087800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:164085000-164085400	Enhancers	Psoas Muscle	Psoas
22	chr6:164085200-164087800	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links