Variant report

Variant	rs566156839
Chromosome Location	chr15:76483791-76483792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:76483708-76483938	GM12891	blood:	n/a	chr15:76483801-76483814
2	CTCF	chr15:76481901-76484038	A549	lung:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483801-76483814 chr15:76483318-76483326
3	CTCF	chr15:76483740-76483890	GM12864	blood:	n/a	chr15:76483801-76483814
4	CTCF	chr15:76483780-76483930	GM12866	blood:	n/a	chr15:76483801-76483814
5	CTCF	chr15:76483760-76483910	GM12868	blood:	n/a	chr15:76483801-76483814
6	CTCF	chr15:76483680-76483830	HepG2	liver:	n/a	chr15:76483801-76483814
7	CTCF	chr15:76483760-76483910	GM12872	blood:	n/a	chr15:76483801-76483814
8	CTCF	chr15:76483760-76483910	GM12871	blood:	n/a	chr15:76483801-76483814
9	CTCF	chr15:76483707-76483936	GM19238	blood:	n/a	chr15:76483801-76483814
10	CTCF	chr15:76483680-76483830	HEK293	kidney:	n/a	chr15:76483801-76483814
11	CTCF	chr15:76483782-76483881	GM13976	blood:	n/a	chr15:76483801-76483814
12	CTCF	chr15:76483703-76483920	GM12892	blood:	n/a	chr15:76483801-76483814
13	CTCF	chr15:76483740-76483890	GM12865	blood:	n/a	chr15:76483801-76483814
14	CTCF	chr15:76483720-76483870	GM12873	blood:	n/a	chr15:76483801-76483814
15	CTCF	chr15:76483700-76483850	GM12874	blood:	n/a	chr15:76483801-76483814
16	CTCF	chr15:76483760-76483910	GM06990	blood:	n/a	chr15:76483801-76483814
17	CTCF	chr15:76483720-76483870	GM12874	blood:	n/a	chr15:76483801-76483814
18	SMC3	chr15:76483076-76483930	GM12878	blood:	n/a	chr15:76483269-76483283
19	CTCF	chr15:76483720-76483870	A549	lung:	n/a	chr15:76483801-76483814
20	FOXM1	chr15:76482975-76483938	GM12878	blood:	n/a	n/a
21	CTCF	chr15:76483043-76484008	GM12878	blood:	n/a	chr15:76483268-76483284 chr15:76483269-76483290 chr15:76483271-76483278 chr15:76483267-76483285 chr15:76483801-76483814 chr15:76483318-76483326
22	CTCF	chr15:76483760-76483910	GM12865	blood:	n/a	chr15:76483801-76483814
23	CTCF	chr15:76483660-76483810	GM12869	blood:	n/a	n/a
24	CTCF	chr15:76483724-76483920	GM19240	blood:	n/a	chr15:76483801-76483814
25	STAT5A	chr15:76483051-76484013	GM12878	blood:	n/a	n/a
26	MTA3	chr15:76482981-76484062	GM12878	blood:	n/a	n/a
27	CTCF	chr15:76483700-76483850	GM12870	blood:	n/a	chr15:76483801-76483814
28	CTCF	chr15:76483722-76483928	GM12878	blood:	n/a	chr15:76483801-76483814
29	CTCF	chr15:76483760-76483910	GM12864	blood:	n/a	chr15:76483801-76483814
30	MAZ	chr15:76483093-76483831	GM12878	blood:	n/a	n/a
31	RUNX3	chr15:76483018-76483975	GM12878	blood:	n/a	n/a
32	CTCF	chr15:76483740-76483890	GM12875	blood:	n/a	chr15:76483801-76483814
33	CTCF	chr15:76483758-76483885	GM10248	blood:	n/a	chr15:76483801-76483814
34	EBF1	chr15:76483633-76483806	GM12878	blood:	n/a	n/a
35	CTCF	chr15:76483680-76483830	GM12872	blood:	n/a	chr15:76483801-76483814
36	RAD21	chr15:76482804-76483918	SK-N-SH	brain:	n/a	chr15:76483837-76483849 chr15:76483268-76483287
37	ZNF143	chr15:76483092-76483866	GM12878	blood:	n/a	chr15:76483308-76483326
38	CTCF	chr15:76483729-76483878	GM19239	blood:	n/a	chr15:76483801-76483814
39	ATF2	chr15:76483089-76483813	GM12878	blood:	n/a	n/a
40	CTCF	chr15:76483700-76483850	GM12878	blood:	n/a	chr15:76483801-76483814
41	POLR2A	chr15:76482807-76484042	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr15:76483760-76483910	GM12869	blood:	n/a	chr15:76483801-76483814
43	BCL3	chr15:76482892-76483810	A549	lung:	n/a	n/a
44	CTCF	chr15:76483740-76483890	GM12872	blood:	n/a	chr15:76483801-76483814
45	RUNX3	chr15:76483034-76483950	GM12878	blood:	n/a	n/a
46	CTCF	chr15:76483776-76483833	LNCaP	prostate:	n/a	chr15:76483801-76483814
47	CTCF	chr15:76483700-76483850	GM06990	blood:	n/a	chr15:76483801-76483814
48	CTCF	chr15:76483740-76483890	GM12871	blood:	n/a	chr15:76483801-76483814
49	CTCF	chr15:76483720-76483870	GM12866	blood:	n/a	chr15:76483801-76483814
50	RELA	chr15:76482971-76483960	GM18951	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:76482702..76486394-chr15:76633656..76636389,3	K562	blood:
2	chr15:76481529..76484202-chr15:76633877..76636476,2	K562	blood:
3	chr15:76472338..76474227-chr15:76482406..76484297,2	K562	blood:
4	chr15:76482689..76486583-chr15:76628039..76631365,3	K562	blood:
5	chr15:76483216..76483808-chr15:76625887..76626857,3	K562	blood:

Variant related genes	Relation type
C15orf27	TF binding region
ENSG00000259514	Chromatin interaction
ENSG00000259422	Chromatin interaction
ENSG00000270036	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1041435	chr15:76444695-76484981	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1046448	chr15:76444695-76485966	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
13	nsv1046099	chr15:76444695-76490547	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv1044603	chr15:76445689-76484981	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	nsv1043026	chr15:76445689-76485966	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv1041619	chr15:76454194-76484981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv1046485	chr15:76454194-76485536	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
18	nsv1053572	chr15:76454194-76485966	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
19	nsv1049916	chr15:76454194-76490547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
20	nsv1053775	chr15:76460462-76485966	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
21	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
22	esv274972	chr15:76483342-76485536	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76478200-76488400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:76478600-76487800	Weak transcription	Right Atrium	heart
3	chr15:76479800-76487400	Weak transcription	Psoas Muscle	Psoas
4	chr15:76481800-76484800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:76482600-76483800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:76482600-76484200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
7	chr15:76482600-76484400	Enhancers	Spleen	Spleen
8	chr15:76482600-76484600	Enhancers	Gastric	stomach
9	chr15:76482800-76483800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr15:76482800-76483800	Enhancers	HMEC	breast
11	chr15:76482800-76484000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:76482800-76484200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr15:76482800-76484200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr15:76482800-76484200	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr15:76482800-76484400	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr15:76483000-76483800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr15:76483000-76483800	Enhancers	Liver	Liver
18	chr15:76483000-76483800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr15:76483000-76483800	Bivalent Enhancer	Fetal Brain Male	brain
20	chr15:76483000-76483800	Enhancers	HUVEC	blood vessel
21	chr15:76483000-76483800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
22	chr15:76483000-76484000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr15:76483000-76484000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:76483000-76484000	Bivalent Enhancer	Fetal Thymus	thymus
25	chr15:76483000-76484200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
26	chr15:76483000-76484800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:76483200-76483800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr15:76483200-76483800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr15:76483200-76483800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr15:76483200-76483800	Enhancers	NHDF-Ad	bronchial
31	chr15:76483200-76484000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
32	chr15:76483200-76484000	Bivalent Enhancer	Osteobl	bone
33	chr15:76483200-76484200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:76483200-76484200	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr15:76483200-76485200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:76483200-76488000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr15:76483200-76488200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:76483200-76488400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:76483400-76483800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
40	chr15:76483400-76483800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr15:76483400-76483800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:76483400-76483800	Weak transcription	Esophagus	oesophagus
43	chr15:76483400-76483800	Bivalent Enhancer	Fetal Intestine Large	intestine
44	chr15:76483400-76483800	Enhancers	Placenta	Placenta
45	chr15:76483400-76483800	Weak transcription	Ovary	ovary
46	chr15:76483400-76483800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr15:76483400-76483800	Enhancers	Dnd41	blood
48	chr15:76483400-76483800	Flanking Active TSS	HepG2	liver
49	chr15:76483400-76484000	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr15:76483400-76484000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum

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