Variant report

Variant	rs566256404
Chromosome Location	chr14:25477016-25477017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25475307..25477626-chr14:25483489..25485932,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25473000-25477800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:25473400-25477200	Enhancers	Fetal Intestine Small	intestine
3	chr14:25473400-25477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:25473400-25478600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:25473400-25478800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:25473400-25479200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:25473600-25478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:25473800-25478000	Weak transcription	Fetal Brain Male	brain
9	chr14:25473800-25478200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:25474200-25477800	Enhancers	HepG2	liver
11	chr14:25474800-25477400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:25475200-25477200	Enhancers	Fetal Intestine Large	intestine
13	chr14:25475200-25478000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:25475200-25480800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr14:25475400-25477400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:25475400-25478800	Enhancers	Fetal Heart	heart
17	chr14:25475600-25477400	Enhancers	Stomach Mucosa	stomach
18	chr14:25475600-25478800	Weak transcription	Lung	lung
19	chr14:25475600-25479400	Enhancers	Fetal Lung	lung
20	chr14:25475800-25477200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:25475800-25477200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:25475800-25477200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:25475800-25477200	Enhancers	NHDF-Ad	bronchial
24	chr14:25475800-25477200	Enhancers	Osteobl	bone
25	chr14:25475800-25477400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:25475800-25477400	Enhancers	NHEK	skin
27	chr14:25476000-25477200	Enhancers	HUVEC	blood vessel
28	chr14:25476000-25477600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:25476200-25477200	Enhancers	Colon Smooth Muscle	Colon
30	chr14:25476200-25477200	Enhancers	Duodenum Mucosa	Duodenum
31	chr14:25476200-25477800	Enhancers	Brain Angular Gyrus	brain
32	chr14:25476200-25477800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr14:25476200-25479400	Enhancers	Brain Cingulate Gyrus	brain
34	chr14:25476400-25477400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:25476400-25477400	Enhancers	Brain Anterior Caudate	brain
36	chr14:25476400-25479400	Enhancers	Brain Hippocampus Middle	brain
37	chr14:25476400-25485000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr14:25476600-25477200	Enhancers	Adipose Nuclei	Adipose
39	chr14:25476600-25477400	Enhancers	Placenta	Placenta
40	chr14:25476600-25477400	Flanking Active TSS	HSMM	muscle
41	chr14:25476600-25477600	Enhancers	Right Atrium	heart
42	chr14:25476600-25477600	Enhancers	Small Intestine	intestine
43	chr14:25476600-25477800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr14:25476600-25477800	Enhancers	Fetal Muscle Leg	muscle
45	chr14:25476600-25477800	Enhancers	Pancreas	Pancrea
46	chr14:25476600-25478000	Enhancers	Left Ventricle	heart
47	chr14:25476600-25478200	Enhancers	Right Ventricle	heart
48	chr14:25476800-25477200	Enhancers	Hela-S3	cervix
49	chr14:25476800-25477400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr14:25476800-25477400	Enhancers	NH-A	brain

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