Variant report

Variant	rs566294308
Chromosome Location	chr14:70798630-70798631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70798472..70800440-chr14:70832228..70834010,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3423875	chr14:70797749-70799547	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3523059	chr14:70798339-70798630	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70783400-70799200	Weak transcription	NHEK	skin
2	chr14:70784000-70801000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70784200-70800600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:70784800-70798800	Weak transcription	Gastric	stomach
5	chr14:70785400-70799200	Weak transcription	Stomach Mucosa	stomach
6	chr14:70785600-70799000	Weak transcription	Psoas Muscle	Psoas
7	chr14:70786000-70799200	Weak transcription	Pancreas	Pancrea
8	chr14:70788200-70813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:70789400-70798800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:70789400-70799000	Weak transcription	Right Ventricle	heart
11	chr14:70789800-70798800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:70790400-70799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:70790400-70799200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:70790600-70798800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:70790600-70799400	Weak transcription	Brain Anterior Caudate	brain
16	chr14:70791000-70798800	Weak transcription	Colonic Mucosa	Colon
17	chr14:70791000-70799800	Weak transcription	Fetal Heart	heart
18	chr14:70791200-70808600	Weak transcription	HUVEC	blood vessel
19	chr14:70791400-70799000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:70791400-70799600	Weak transcription	NHLF	lung
21	chr14:70791600-70799400	Weak transcription	Fetal Brain Male	brain
22	chr14:70792000-70809800	Weak transcription	Hela-S3	cervix
23	chr14:70792400-70798800	Weak transcription	Lung	lung
24	chr14:70792800-70798800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:70792800-70798800	Weak transcription	A549	lung
26	chr14:70792800-70799400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:70792800-70799400	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:70792800-70801000	Weak transcription	Small Intestine	intestine
29	chr14:70792800-70825200	Weak transcription	NH-A	brain
30	chr14:70793000-70799400	Weak transcription	HSMMtube	muscle
31	chr14:70793200-70799000	Weak transcription	HMEC	breast
32	chr14:70793200-70799200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:70793200-70799600	Weak transcription	Osteobl	bone
34	chr14:70793600-70798800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:70794000-70798800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:70794600-70798800	Weak transcription	Fetal Thymus	thymus
37	chr14:70794800-70798800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr14:70795200-70798800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:70795200-70798800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:70795200-70799000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:70795400-70798800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:70795400-70798800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:70795400-70798800	Weak transcription	Fetal Lung	lung
44	chr14:70795400-70798800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:70795400-70798800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr14:70795400-70799200	Weak transcription	Fetal Kidney	kidney
47	chr14:70795400-70799400	Weak transcription	HepG2	liver
48	chr14:70795600-70798800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:70795600-70798800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:70795600-70798800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links