Variant report

Variant	rs566468627
Chromosome Location	chr1:93873534-93873535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93872800-93873800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:93873000-93873800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:93873200-93874600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:93873200-93876000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr1:93873400-93875400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:93873400-93875600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:93873400-93876000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr1:93873400-93876200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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