Variant report

Variant	rs56653501
Chromosome Location	chr14:77940314-77940315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77933031..77935818-chr14:77938168..77941645,3	MCF-7	breast:
2	chr14:77936196..77939744-chr14:77940216..77943828,4	MCF-7	breast:
3	chr14:77940273..77941885-chr14:77943418..77945561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11982	1.00[AFR][1000 genomes]
rs56996297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60198797	1.00[AMR][1000 genomes]
rs73313253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319059	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014656	0.81[AFR][1000 genomes]
rs8018812	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77935800-77940400	Weak transcription	NHEK	skin
2	chr14:77936000-77941000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:77936000-77944600	Weak transcription	GM12878-XiMat	blood
4	chr14:77936200-77940400	Weak transcription	Fetal Kidney	kidney
5	chr14:77936200-77940800	Weak transcription	Placenta	Placenta
6	chr14:77936200-77941000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:77936200-77941000	Weak transcription	Fetal Lung	lung
8	chr14:77936200-77948600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:77936400-77940400	Weak transcription	Adipose Nuclei	Adipose
10	chr14:77936400-77940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:77936400-77940800	Weak transcription	HepG2	liver
12	chr14:77936400-77944800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:77936400-77945000	Weak transcription	Gastric	stomach
14	chr14:77936400-77946000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:77936600-77940800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:77936600-77947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:77936800-77945000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:77937000-77945000	Weak transcription	Spleen	Spleen
19	chr14:77939400-77940800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:77939400-77941800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:77940200-77940400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:77940200-77940600	Bivalent Enhancer	Osteobl	bone
23	chr14:77940200-77941400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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