Variant report

Variant	rs566541963
Chromosome Location	chr4:107140801-107140802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879703	chr4:107082926-107163128	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3413270	chr4:107140588-107140863	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107066400-107151200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:107071800-107176400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:107083200-107173400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:107083800-107164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:107084400-107141400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:107085000-107150000	Weak transcription	Dnd41	blood
7	chr4:107085400-107169600	Weak transcription	Fetal Kidney	kidney
8	chr4:107088400-107166400	Weak transcription	K562	blood
9	chr4:107105000-107169600	Weak transcription	Fetal Brain Female	brain
10	chr4:107106800-107176400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:107107000-107149600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:107111800-107160200	Weak transcription	NHEK	skin
13	chr4:107112400-107170400	Weak transcription	Thymus	Thymus
14	chr4:107113000-107150800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:107113000-107154800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:107113400-107150200	Weak transcription	Osteobl	bone
17	chr4:107114400-107149200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:107114600-107149600	Weak transcription	HSMMtube	muscle
19	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:107114800-107141200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr4:107114800-107141200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:107114800-107141200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:107114800-107141400	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:107114800-107141800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:107114800-107149600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:107114800-107149600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:107114800-107149600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:107114800-107150400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:107114800-107151000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:107114800-107154000	Weak transcription	Brain Anterior Caudate	brain
31	chr4:107114800-107154200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:107114800-107170400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:107115000-107141400	Weak transcription	Liver	Liver
34	chr4:107115000-107150400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:107115000-107176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
37	chr4:107128200-107176400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:107128400-107176400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:107130000-107141400	Weak transcription	Fetal Intestine Small	intestine
40	chr4:107130000-107143600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:107130000-107181200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:107130200-107141200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:107130200-107141200	Weak transcription	Psoas Muscle	Psoas
44	chr4:107130200-107141400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:107130200-107141400	Weak transcription	Aorta	Aorta
46	chr4:107130200-107144400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:107130200-107148400	Weak transcription	Spleen	Spleen
48	chr4:107130200-107149600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr4:107130200-107149600	Weak transcription	Fetal Thymus	thymus
50	chr4:107130200-107149600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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