Variant report

Variant	rs56665661
Chromosome Location	chr1:92887378-92887379
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10399671	0.87[AFR][1000 genomes]
rs11164423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11166542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078746	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098095	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17131621	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131632	0.88[AFR][1000 genomes]
rs1819256	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4617457	1.00[EUR][1000 genomes]
rs55993081	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56112620	0.91[EUR][1000 genomes]
rs57992264	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142139	0.83[AMR][1000 genomes]
rs6603970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662381	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662565	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671543	0.83[AMR][1000 genomes]
rs6679419	0.91[EUR][1000 genomes]
rs6681027	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683456	0.87[AFR][1000 genomes]
rs6694248	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6695475	0.83[AMR][1000 genomes]
rs72958703	0.91[EUR][1000 genomes]
rs72958746	0.83[AMR][1000 genomes]
rs72958774	0.83[AMR][1000 genomes]
rs72958796	0.83[AMR][1000 genomes]
rs72960815	0.83[AMR][1000 genomes]
rs72960831	0.88[AMR][1000 genomes]
rs72960835	0.88[AMR][1000 genomes]
rs72960860	0.88[AMR][1000 genomes]
rs72960870	0.88[AMR][1000 genomes]
rs72960872	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7513631	0.88[AMR][1000 genomes]
rs7520675	0.83[AMR][1000 genomes]
rs7522789	0.91[EUR][1000 genomes]
rs7535181	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92885600-92890000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:92885600-92890000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:92885600-92891000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:92885800-92890000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:92885800-92890200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:92885800-92890400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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