Variant report

Variant	rs566663604
Chromosome Location	chr18:29130151-29130152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29129102..29131935-chr18:29134564..29137415,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B4GALT6-1	chr18:29130095-29130322	ENSG00000264859.1

Variant related genes	Relation type
ENSG00000264859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv576635	chr18:29129931-29148814	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29096800-29134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:29097800-29130600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:29101400-29131800	Weak transcription	Stomach Mucosa	stomach
4	chr18:29117000-29136000	Weak transcription	A549	lung
5	chr18:29122800-29131800	Weak transcription	Colonic Mucosa	Colon
6	chr18:29123600-29131200	Weak transcription	Placenta	Placenta
7	chr18:29123600-29142200	Weak transcription	Fetal Kidney	kidney
8	chr18:29126600-29131000	Weak transcription	Liver	Liver
9	chr18:29126600-29132800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:29126600-29133800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr18:29126600-29136200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:29126800-29136000	Weak transcription	GM12878-XiMat	blood
13	chr18:29126800-29136200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:29127000-29136200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr18:29127200-29131600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:29127200-29131600	Weak transcription	Fetal Lung	lung
17	chr18:29127200-29136000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr18:29127200-29136200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr18:29127200-29136200	Weak transcription	Ovary	ovary
20	chr18:29127200-29136200	Weak transcription	Hela-S3	cervix
21	chr18:29127400-29131200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr18:29127400-29132600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr18:29127400-29136000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr18:29127600-29136000	Weak transcription	NHEK	skin
25	chr18:29127600-29136200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr18:29128000-29131600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr18:29128000-29133800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr18:29128600-29130200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr18:29129000-29130400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr18:29129200-29143200	Weak transcription	Gastric	stomach
31	chr18:29129400-29131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr18:29129600-29130400	Strong transcription	HMEC	breast
33	chr18:29129600-29130800	Weak transcription	HepG2	liver
34	chr18:29129800-29131000	Weak transcription	Fetal Intestine Large	intestine
35	chr18:29129800-29131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr18:29129800-29134200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr18:29129800-29134200	Weak transcription	Fetal Intestine Small	intestine
38	chr18:29130000-29134400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:29130000-29134800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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