Variant report

Variant	rs566705835
Chromosome Location	chr7:48129769-48129770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:48017456..48020295-chr7:48126750..48129913,5	K562	blood:
2	chr7:48017568..48020341-chr7:48128356..48131105,2	MCF-7	breast:
3	chr7:48017535..48019169-chr7:48128413..48129998,2	K562	blood:

Variant related genes	Relation type
ENSG00000136273	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv470221	chr7:47917495-48354363	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv464442	chr7:47917495-48354820	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv606893	chr7:47917495-48354820	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1027414	chr7:48117684-48438543	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv997355	chr7:48128431-48138826	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48127600-48130000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:48127600-48130200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:48127600-48130200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:48127600-48130200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr7:48127600-48130400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:48127600-48130400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr7:48127600-48130400	Active TSS	Rectal Smooth Muscle	rectum
8	chr7:48127600-48130600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:48127800-48129800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr7:48127800-48129800	Active TSS	Brain Anterior Caudate	brain
11	chr7:48127800-48130200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:48127800-48130200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:48127800-48130200	Active TSS	Colon Smooth Muscle	Colon
14	chr7:48127800-48130200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr7:48127800-48130400	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr7:48127800-48130400	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr7:48127800-48130600	Active TSS	Psoas Muscle	Psoas
18	chr7:48128000-48129800	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr7:48128000-48129800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:48128000-48129800	Active TSS	Lung	lung
21	chr7:48128000-48130000	Active TSS	Left Ventricle	heart
22	chr7:48128000-48130000	Active TSS	A549	lung
23	chr7:48128000-48130000	Active TSS	HSMMtube	muscle
24	chr7:48128000-48130200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:48128000-48130200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:48128000-48130200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:48128000-48130200	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr7:48128000-48130200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:48128000-48130400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:48128000-48130600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:48128000-48131200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr7:48128200-48129800	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr7:48128200-48129800	Active TSS	Esophagus	oesophagus
34	chr7:48128200-48129800	Active TSS	Placenta Amnion	Placenta Amnion
35	chr7:48128200-48130000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:48128200-48130000	Active TSS	NHDF-Ad	bronchial
37	chr7:48128200-48130200	Active TSS	Liver	Liver
38	chr7:48128200-48130200	Active TSS	Fetal Kidney	kidney
39	chr7:48128200-48130400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:48128200-48130600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:48128400-48129800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:48128400-48129800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:48128400-48129800	Active TSS	Brain Substantia Nigra	brain
44	chr7:48128400-48129800	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr7:48128400-48129800	Active TSS	Stomach Mucosa	stomach
46	chr7:48128400-48130000	Active TSS	Osteobl	bone
47	chr7:48128400-48130200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
48	chr7:48128600-48129800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:48128600-48129800	Active TSS	HMEC	breast
50	chr7:48128600-48130000	Active TSS	Brain Cingulate Gyrus	brain

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