Variant report

Variant	rs566773363
Chromosome Location	chr7:122326224-122326225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122317600-122326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:122317600-122327000	Weak transcription	Fetal Stomach	stomach
3	chr7:122320400-122326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:122320800-122329400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:122322400-122329200	Weak transcription	Gastric	stomach
6	chr7:122322600-122328400	Weak transcription	HepG2	liver
7	chr7:122323200-122328600	Weak transcription	Pancreas	Pancrea
8	chr7:122324000-122326600	Weak transcription	Left Ventricle	heart
9	chr7:122324000-122331600	Weak transcription	Lung	lung
10	chr7:122324000-122336000	Weak transcription	Right Atrium	heart
11	chr7:122324200-122336000	Weak transcription	Fetal Lung	lung
12	chr7:122325200-122327600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:122325200-122327600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:122325200-122327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:122325200-122327600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:122325200-122327800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:122325200-122327800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:122325200-122327800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:122325200-122329000	Enhancers	Fetal Heart	heart
20	chr7:122325600-122328400	Weak transcription	Stomach Mucosa	stomach
21	chr7:122325600-122329600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:122325800-122326600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:122325800-122327000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:122326000-122326400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links