Variant report

Variant	rs56685707
Chromosome Location	chr6:151116693-151116694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11961087	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11961263	0.89[EUR][1000 genomes]
rs11966279	0.89[EUR][1000 genomes]
rs998307	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:151097600-151134800	Weak transcription	HUVEC	blood vessel
5	chr6:151098400-151130400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:151098800-151130000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:151105600-151117200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:151105800-151118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:151106000-151130400	Weak transcription	Right Ventricle	heart
10	chr6:151107600-151130200	Weak transcription	Gastric	stomach
11	chr6:151108400-151133800	Weak transcription	HMEC	breast
12	chr6:151109200-151126000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:151109600-151117000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:151109600-151132200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:151109800-151117000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:151109800-151163800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:151110000-151117000	Weak transcription	Spleen	Spleen
18	chr6:151110000-151117200	Weak transcription	Placenta	Placenta
19	chr6:151110000-151117400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:151110000-151122000	Weak transcription	Brain Substantia Nigra	brain
21	chr6:151110000-151130000	Weak transcription	Left Ventricle	heart
22	chr6:151110000-151130000	Weak transcription	Ovary	ovary
23	chr6:151110000-151130200	Weak transcription	Esophagus	oesophagus
24	chr6:151110200-151117000	Weak transcription	Liver	Liver
25	chr6:151110200-151117800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:151110200-151126400	Weak transcription	Fetal Kidney	kidney
27	chr6:151110200-151130200	Weak transcription	Brain Anterior Caudate	brain
28	chr6:151110200-151130400	Weak transcription	Aorta	Aorta
29	chr6:151110400-151117000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:151110400-151119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:151110600-151178000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:151111200-151117400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:151111200-151161400	Weak transcription	Small Intestine	intestine
34	chr6:151111800-151117000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:151112000-151117000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:151112400-151117000	Weak transcription	Fetal Stomach	stomach
37	chr6:151113000-151116800	Weak transcription	Fetal Thymus	thymus
38	chr6:151114800-151117000	Weak transcription	Primary B cells from cord blood	blood
39	chr6:151115000-151151800	Weak transcription	Primary T cells from cord blood	blood
40	chr6:151115800-151121600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:151116200-151119200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:151116400-151118600	Strong transcription	Lung	lung
43	chr6:151116400-151119800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:151116400-151134400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:151116600-151122800	Strong transcription	Thymus	Thymus
46	chr6:151116600-151130000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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