Variant report

Variant	rs56703899
Chromosome Location	chr7:102713731-102713732
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1829958	1.00[AMR][1000 genomes]
rs61414918	1.00[AMR][1000 genomes]
rs61666915	1.00[AMR][1000 genomes]
rs73408238	1.00[AFR][1000 genomes]
rs73408260	1.00[AFR][1000 genomes]
rs73408289	1.00[AFR][1000 genomes]
rs73410130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410133	1.00[AMR][1000 genomes]
rs73410139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv526764	chr7:102701826-102737251	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102679200-102713800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:102702200-102713800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:102702200-102714600	Weak transcription	Ovary	ovary
4	chr7:102706800-102714000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:102709000-102714200	Weak transcription	Fetal Lung	lung
6	chr7:102710200-102713800	Weak transcription	Pancreas	Pancrea
7	chr7:102710200-102714400	Weak transcription	Brain Angular Gyrus	brain
8	chr7:102711400-102714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:102711400-102714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:102713000-102713800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:102713000-102714200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:102713000-102714200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:102713000-102714200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:102713400-102714400	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links