Variant report

Variant	rs56714232
Chromosome Location	chr5:167662776-167662777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10058988	1.00[AMR][1000 genomes]
rs10065873	1.00[AMR][1000 genomes]
rs10067509	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068509	1.00[AMR][1000 genomes]
rs35113914	1.00[AMR][1000 genomes]
rs55883445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58846151	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58958616	1.00[AMR][1000 genomes]
rs60211241	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60525746	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167646200-167674000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167646600-167664600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167646800-167672000	Weak transcription	Brain Anterior Caudate	brain
4	chr5:167646800-167674000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:167646800-167695800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:167647200-167673600	Weak transcription	Fetal Lung	lung
7	chr5:167655600-167669000	Weak transcription	Right Ventricle	heart
8	chr5:167656400-167674000	Weak transcription	HSMM	muscle
9	chr5:167658200-167673600	Weak transcription	Fetal Brain Male	brain
10	chr5:167658800-167666600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:167660400-167668800	Weak transcription	Left Ventricle	heart
12	chr5:167660400-167671400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167660600-167662800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:167660800-167668600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167661000-167662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:167661600-167688200	Weak transcription	HMEC	breast
17	chr5:167662200-167673800	Weak transcription	Brain Germinal Matrix	brain
18	chr5:167662600-167663600	Strong transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links