Variant report

Variant	rs567142998
Chromosome Location	chr9:214802-214803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:207)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:207 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr9:214478-215242	U2OS	brain:	n/a	n/a
2	POLR2A	chr9:214479-215583	GM12892	blood:	n/a	n/a
3	MAX	chr9:214324-215618	ECC-1	luminal epithelium:	n/a	n/a
4	GABPA	chr9:214482-214959	K562	blood:	n/a	n/a
5	POLR2A	chr9:214330-215424	H1-hESC	embryonic stem cell:	n/a	n/a
6	YY1	chr9:214518-215242	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:214424-215672	MCF10A-Er-Src	breast:	n/a	n/a
8	ELF1	chr9:214511-215217	MCF-7	breast:	n/a	n/a
9	POLR2A	chr9:214362-215527	MCF-7	breast:	n/a	n/a
10	CBX3	chr9:214711-215284	K562	blood:	n/a	n/a
11	POLR2A	chr9:213871-215545	K562	blood:	n/a	n/a
12	MTA3	chr9:214601-215267	GM12878	blood:	n/a	n/a
13	ARID3A	chr9:214214-215154	K562	blood:	n/a	n/a
14	POLR2A	chr9:214482-215315	ECC-1	luminal epithelium:	n/a	n/a
15	HEY1	chr9:214417-215374	K562	blood:	n/a	n/a
16	POLR2A	chr9:214299-216055	PBDE	blood:	n/a	n/a
17	FOXA2	chr9:214767-215373	A549	lung:	n/a	n/a
18	TBP	chr9:214058-215655	K562	blood:	n/a	n/a
19	TEAD4	chr9:214387-215324	K562	blood:	n/a	n/a
20	NRF1	chr9:214528-214843	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr9:214112-215488	K562	blood:	n/a	n/a
22	ELF1	chr9:214464-215586	GM12878	blood:	n/a	n/a
23	EGR1	chr9:214542-214928	K562	blood:	n/a	n/a
24	MAX	chr9:214441-215442	MCF-7	breast:	n/a	n/a
25	YY1	chr9:214581-215318	GM12878	blood:	n/a	n/a
26	TAF1	chr9:214453-215592	ECC-1	luminal epithelium:	n/a	n/a
27	POLR2A	chr9:214466-215374	GM12892	blood:	n/a	n/a
28	REST	chr9:214542-215491	HL-60	blood:	n/a	n/a
29	POLR2A	chr9:214563-215358	MCF-7	breast:	n/a	n/a
30	YY1	chr9:214531-215266	K562	blood:	n/a	n/a
31	POLR2A	chr9:214484-214967	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr9:214154-215658	K562	blood:	n/a	n/a
33	NFIC	chr9:214437-215259	ECC-1	luminal epithelium:	n/a	n/a
34	POLR2A	chr9:214321-215388	K562	blood:	n/a	n/a
35	IRF1	chr9:214556-215361	K562	blood:	n/a	n/a
36	POLR2A	chr9:214537-215224	A549	lung:	n/a	n/a
37	POLR2A	chr9:214422-215609	GM18505	blood:	n/a	n/a
38	HDAC2	chr9:214608-215635	MCF-7	breast:	n/a	n/a
39	KAP1	chr9:214729-215447	HEK293	kidney:	n/a	n/a
40	MXI1	chr9:214700-215254	GM12878	blood:	n/a	n/a
41	EBF1	chr9:214473-214986	GM12878	blood:	n/a	n/a
42	PML	chr9:214733-215447	K562	blood:	n/a	n/a
43	ZNF263	chr9:214539-215655	HEK293-T-REx	kidney:	n/a	n/a
44	POLR2A	chr9:214468-215420	GM12878	blood:	n/a	n/a
45	MYC	chr9:214152-215473	K562	blood:	n/a	n/a
46	MAX	chr9:214396-215563	MCF-7	breast:	n/a	n/a
47	RUNX3	chr9:214471-215326	GM12878	blood:	n/a	n/a
48	PAX5	chr9:214612-215159	GM12878	blood:	n/a	n/a
49	ZBTB7A	chr9:214541-215292	ECC-1	luminal epithelium:	n/a	n/a
50	RAD21	chr9:214481-215427	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:213589..216422-chr9:270983..274599,7	K562	blood:
2	chr20:61557637..61559255-chr9:214332..216174,2	MCF-7	breast:
3	chr9:212545..218648-chr9:270340..281940,20	K562	blood:

No data

Variant related genes	Relation type
DOCK8	TF binding region
ENSG00000235880	Chromatin interaction
ENSG00000101191	Chromatin interaction
ENSG00000107099	Chromatin interaction

Extended variants
information (count: 225 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:225 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv427835	chr9:31994-235675	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2758174	chr9:31994-383816	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2759654	chr9:31994-383816	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv612981	chr9:39037-290841	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv2755034	chr9:40910-242797	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv34610	chr9:40910-271132	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv2752301	chr9:40910-274606	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2752302	chr9:40910-274606	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2752303	chr9:40910-277989	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv429974	chr9:40910-289061	Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv34714	chr9:40910-317370	Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv2752304	chr9:40910-409398	Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv948375	chr9:40910-439102	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	esv2764172	chr9:40910-593899	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
19	esv2753749	chr9:46431-266505	Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	esv2752306	chr9:46431-499586	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
21	nsv1031865	chr9:46587-218183	Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
22	nsv1031410	chr9:46587-230228	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
23	nsv1027808	chr9:46587-245752	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
24	nsv1026296	chr9:46587-261945	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv1031167	chr9:46587-272950	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
26	nsv1015933	chr9:46587-289419	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	nsv1026546	chr9:46587-290670	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
28	nsv1032144	chr9:46587-292002	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	nsv1033678	chr9:46587-319961	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
30	nsv1033923	chr9:46587-322795	ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
31	nsv1015879	chr9:46587-360382	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
32	nsv1021015	chr9:46587-370439	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
33	nsv1034651	chr9:46587-399040	Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
34	nsv515505	chr9:46587-449700	Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv1024015	chr9:46587-449798	Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	nsv1033067	chr9:46587-499586	Bivalent Enhancer Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	nsv1018439	chr9:46587-518103	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
38	nsv530903	chr9:52389-356138	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
39	esv2757299	chr9:57964-362209	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
40	nsv8403	chr9:62805-324255	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
41	nsv891942	chr9:84832-257973	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
42	nsv1023234	chr9:88018-309054	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
43	nsv1033689	chr9:88018-358384	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
44	nsv1015260	chr9:101857-348466	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv612983	chr9:102645-272191	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
46	nsv612984	chr9:108998-318153	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
47	nsv1029147	chr9:110685-272950	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
48	nsv1029333	chr9:110685-495126	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv612985	chr9:112542-358932	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
50	nsv1015468	chr9:115889-273160	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:213000-215200	Active TSS	Brain Substantia Nigra	brain
2	chr9:213600-215600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:213800-215800	Active TSS	K562	blood
4	chr9:214000-215200	Active TSS	Primary hematopoietic stem cells	blood
5	chr9:214000-215400	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr9:214000-215600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:214000-215600	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr9:214200-215400	Active TSS	Primary T cells from cord blood	blood
9	chr9:214200-215400	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr9:214200-215400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr9:214200-215400	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr9:214200-215400	Active TSS	Brain Anterior Caudate	brain
13	chr9:214200-215400	Active TSS	Stomach Mucosa	stomach
14	chr9:214200-215400	Active TSS	NHEK	skin
15	chr9:214200-215600	Bivalent/Poised TSS	Fetal Kidney	kidney
16	chr9:214200-215600	Active TSS	GM12878-XiMat	blood
17	chr9:214200-215800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr9:214200-215800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:214200-216000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr9:214200-216000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:214200-216000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr9:214200-216000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr9:214200-216000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
24	chr9:214200-216000	Active TSS	Rectal Smooth Muscle	rectum
25	chr9:214200-216400	Active TSS	Right Atrium	heart
26	chr9:214200-217000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
27	chr9:214200-217400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr9:214400-215000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:214400-215200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr9:214400-215200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr9:214400-215200	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr9:214400-215200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
33	chr9:214400-215200	Active TSS	Placenta	Placenta
34	chr9:214400-215200	Bivalent/Poised TSS	Fetal Stomach	stomach
35	chr9:214400-215200	Active TSS	Fetal Thymus	thymus
36	chr9:214400-215200	Flanking Active TSS	Lung	lung
37	chr9:214400-215200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
38	chr9:214400-215400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr9:214400-215400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:214400-215400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:214400-215400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:214400-215400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:214400-215400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr9:214400-215400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:214400-215400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:214400-215400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr9:214400-215400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:214400-215400	Active TSS	Placenta Amnion	Placenta Amnion
49	chr9:214400-215400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
50	chr9:214400-215400	Active TSS	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links