Variant report
| Variant | rs56715581 |
|---|---|
| Chromosome Location | chr5:92212884-92212885 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs17082555 | 1.00[EUR][1000 genomes] |
| rs59258692 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59369031 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60126216 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61675340 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6557060 | 1.00[EUR][1000 genomes] |
| rs6898957 | 1.00[EUR][1000 genomes] |
| rs73140852 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140856 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140858 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140859 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140863 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140864 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140868 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140899 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73140901 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73142806 | 0.98[AFR][1000 genomes] |
| rs73142810 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73142812 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73142816 | 0.92[AFR][1000 genomes] |
| rs73142822 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73144863 | 1.00[EUR][1000 genomes] |
| rs7736450 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015770 | chr5:91911877-92498264 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv830398 | chr5:92102826-92281331 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022712 | chr5:92191693-92415111 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1028930 | chr5:92194772-92415111 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:92212400-92215000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
