Variant report

Variant	rs56720140
Chromosome Location	chr3:46765886-46765887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46764632..46767218-chr3:46782393..46785331,2	K562	blood:
2	chr3:46761792..46767256-chr3:46770894..46774909,6	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs4075011	0.86[ASN][1000 genomes]
rs4075012	0.86[ASN][1000 genomes]
rs56084632	0.86[ASN][1000 genomes]
rs57268847	0.86[ASN][1000 genomes]
rs57661142	0.86[ASN][1000 genomes]
rs58245995	0.86[ASN][1000 genomes]
rs58263848	0.86[ASN][1000 genomes]
rs58830807	0.86[ASN][1000 genomes]
rs58943210	0.86[ASN][1000 genomes]
rs59356397	0.86[ASN][1000 genomes]
rs59588744	0.86[ASN][1000 genomes]
rs59721087	0.86[ASN][1000 genomes]
rs59804016	0.86[ASN][1000 genomes]
rs59828146	0.86[ASN][1000 genomes]
rs59859985	0.86[ASN][1000 genomes]
rs60169344	0.82[ASN][1000 genomes]
rs60223148	0.86[ASN][1000 genomes]
rs60294661	0.86[ASN][1000 genomes]
rs60461823	0.83[ASN][1000 genomes]
rs61153905	0.86[ASN][1000 genomes]
rs61298367	0.86[ASN][1000 genomes]
rs62246211	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62246232	0.90[ASN][1000 genomes]
rs62246233	0.88[ASN][1000 genomes]
rs62246251	0.86[ASN][1000 genomes]
rs62246253	0.86[ASN][1000 genomes]
rs62246254	0.86[ASN][1000 genomes]
rs62248376	0.86[ASN][1000 genomes]
rs62248377	0.86[ASN][1000 genomes]
rs62248384	0.86[ASN][1000 genomes]
rs62248385	0.86[ASN][1000 genomes]
rs6442028	0.86[ASN][1000 genomes]
rs6764144	0.90[ASN][1000 genomes]
rs6773559	0.86[ASN][1000 genomes]
rs6780988	0.86[ASN][1000 genomes]
rs6786453	0.86[ASN][1000 genomes]
rs6789181	0.90[ASN][1000 genomes]
rs6797122	0.86[ASN][1000 genomes]
rs6801979	0.81[ASN][1000 genomes]
rs6803880	0.90[ASN][1000 genomes]
rs6805152	0.86[ASN][1000 genomes]
rs6807680	0.86[ASN][1000 genomes]
rs6810260	0.86[ASN][1000 genomes]
rs7616942	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7637019	0.86[ASN][1000 genomes]
rs7642015	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644977	0.86[ASN][1000 genomes]
rs7647424	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007449	chr3:46652343-46986578	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv536554	chr3:46652343-46986578	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv516623	chr3:46680063-46852679	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv2757869	chr3:46680452-46972489	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2759147	chr3:46680452-46972489	Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv1804680	chr3:46704348-46869911	Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv536555	chr3:46706571-46817963	Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv536556	chr3:46706571-46849443	Genic enhancers Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv536557	chr3:46706571-46853434	Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv536558	chr3:46706571-47024756	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv460525	chr3:46728659-46790397	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
12	nsv590179	chr3:46728659-46790397	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
13	nsv876745	chr3:46753976-46884552	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46744000-46792200	Weak transcription	Right Atrium	heart
2	chr3:46761000-46766200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:46764200-46766000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:46765400-46766000	Enhancers	GM12878-XiMat	blood

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