Variant report

Variant	rs56720553
Chromosome Location	chr1:215352104-215352105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10864155	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11806269	1.00[ASN][1000 genomes]
rs11809041	1.00[ASN][1000 genomes]
rs12118235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118508	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118830	1.00[ASN][1000 genomes]
rs12121815	0.86[AMR][1000 genomes]
rs12121939	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123237	1.00[ASN][1000 genomes]
rs12127285	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12132201	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12136185	0.90[AFR][1000 genomes]
rs12138874	0.97[AFR][1000 genomes]
rs12141564	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146057	1.00[ASN][1000 genomes]
rs1339404	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339407	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023977	1.00[ASN][1000 genomes]
rs17024348	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024370	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17604089	1.00[ASN][1000 genomes]
rs17606405	1.00[ASN][1000 genomes]
rs2885814	0.81[AFR][1000 genomes]
rs34999070	1.00[ASN][1000 genomes]
rs56662669	1.00[ASN][1000 genomes]
rs57440894	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs74140846	1.00[ASN][1000 genomes]
rs74140868	1.00[ASN][1000 genomes]
rs74140948	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74140950	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531398	1.00[ASN][1000 genomes]
rs7543935	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551303	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553910	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215340800-215355000	Weak transcription	Osteobl	bone
2	chr1:215348000-215355000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:215350000-215354800	Weak transcription	NHDF-Ad	bronchial
4	chr1:215351800-215355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215352000-215352200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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