Variant report

Variant	rs56728838
Chromosome Location	chr1:215659639-215659640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215645440..215647544-chr1:215658602..215661519,2	MCF-7	breast:
2	chr1:215653919..215659650-chr1:215659919..215663792,9	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs12740635	1.00[AFR][1000 genomes]
rs56849908	1.00[AFR][1000 genomes]
rs57179404	1.00[AFR][1000 genomes]
rs57420199	1.00[AFR][1000 genomes]
rs57432920	1.00[AFR][1000 genomes]
rs57772200	1.00[AFR][1000 genomes]
rs57782276	1.00[AFR][1000 genomes]
rs58393812	1.00[AFR][1000 genomes]
rs58616406	1.00[AFR][1000 genomes]
rs58760828	1.00[AFR][1000 genomes]
rs58896701	1.00[AFR][1000 genomes]
rs59762493	1.00[AFR][1000 genomes]
rs60134994	1.00[AFR][1000 genomes]
rs60365921	1.00[AFR][1000 genomes]
rs60987968	1.00[AFR][1000 genomes]
rs61080723	1.00[AFR][1000 genomes]
rs61490597	1.00[AFR][1000 genomes]
rs61568482	1.00[AFR][1000 genomes]
rs73081431	1.00[AFR][1000 genomes]
rs73081436	1.00[AFR][1000 genomes]
rs73081438	1.00[AFR][1000 genomes]
rs73081440	1.00[AFR][1000 genomes]
rs73081445	1.00[AFR][1000 genomes]
rs73081450	1.00[AFR][1000 genomes]
rs73081451	1.00[AFR][1000 genomes]
rs73081453	1.00[AFR][1000 genomes]
rs73081455	1.00[AFR][1000 genomes]
rs73081459	1.00[AFR][1000 genomes]
rs73081462	1.00[AFR][1000 genomes]
rs73081464	1.00[AFR][1000 genomes]
rs73081465	1.00[AFR][1000 genomes]
rs73081466	1.00[AFR][1000 genomes]
rs73081469	1.00[AFR][1000 genomes]
rs73081470	1.00[AFR][1000 genomes]
rs73081472	1.00[AFR][1000 genomes]
rs73081474	1.00[AFR][1000 genomes]
rs73081477	1.00[AFR][1000 genomes]
rs73081479	1.00[AFR][1000 genomes]
rs73081482	1.00[AFR][1000 genomes]
rs73081485	1.00[AFR][1000 genomes]
rs73081486	1.00[AFR][1000 genomes]
rs73081487	1.00[AFR][1000 genomes]
rs73081489	1.00[AFR][1000 genomes]
rs73081490	1.00[AFR][1000 genomes]
rs73081491	1.00[AFR][1000 genomes]
rs73081499	1.00[AFR][1000 genomes]
rs73081501	1.00[AFR][1000 genomes]
rs73083404	1.00[AFR][1000 genomes]
rs73083406	1.00[AFR][1000 genomes]
rs73083409	1.00[AFR][1000 genomes]
rs73083410	0.90[AFR][1000 genomes]
rs73083413	1.00[AFR][1000 genomes]
rs73100128	1.00[AFR][1000 genomes]
rs73100141	1.00[AFR][1000 genomes]
rs73100142	1.00[AFR][1000 genomes]
rs73100147	1.00[AFR][1000 genomes]
rs73100151	1.00[AFR][1000 genomes]
rs73100153	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv947159	chr1:215645387-215673199	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215648800-215663200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:215656400-215659800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:215657400-215660000	Enhancers	Osteobl	bone
4	chr1:215657600-215660000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr1:215657800-215659800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:215658000-215662200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:215658600-215660200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:215658800-215659800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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