Variant report

Variant	rs56742030
Chromosome Location	chr1:195755269-195755270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12061613	1.00[EUR][1000 genomes]
rs16838961	1.00[EUR][1000 genomes]
rs57057259	1.00[EUR][1000 genomes]
rs58467507	1.00[EUR][1000 genomes]
rs59718710	1.00[EUR][1000 genomes]
rs6658165	1.00[EUR][1000 genomes]
rs6676482	1.00[EUR][1000 genomes]
rs6690674	1.00[EUR][1000 genomes]
rs73056343	1.00[EUR][1000 genomes]
rs73056346	1.00[EUR][1000 genomes]
rs73056348	1.00[EUR][1000 genomes]
rs73056357	1.00[EUR][1000 genomes]
rs73060547	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060549	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060550	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73060553	1.00[EUR][1000 genomes]
rs73060560	1.00[EUR][1000 genomes]
rs73060569	1.00[EUR][1000 genomes]
rs73060572	1.00[EUR][1000 genomes]
rs73065150	1.00[EUR][1000 genomes]
rs73071004	1.00[EUR][1000 genomes]
rs73071007	1.00[EUR][1000 genomes]
rs73071048	1.00[EUR][1000 genomes]
rs73071050	1.00[EUR][1000 genomes]
rs73071052	1.00[EUR][1000 genomes]
rs73071054	1.00[EUR][1000 genomes]
rs73071058	1.00[EUR][1000 genomes]
rs74135147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195754000-195755600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:195755200-195755600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:195755200-195755600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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