Variant report

Variant	rs56774710
Chromosome Location	chr2:37556967-37556968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37545726..37548175-chr2:37554305..37557162,2	K562	blood:
2	chr2:37543073..37544935-chr2:37554432..37557348,2	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10190959	0.85[ASN][1000 genomes]
rs11124578	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1158218	0.89[ASN][1000 genomes]
rs1158219	0.89[ASN][1000 genomes]
rs11689794	0.89[ASN][1000 genomes]
rs12616151	0.86[ASN][1000 genomes]
rs12712532	0.88[ASN][1000 genomes]
rs13015451	0.89[ASN][1000 genomes]
rs13030789	0.87[ASN][1000 genomes]
rs13420463	0.83[ASN][1000 genomes]
rs17020386	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17020490	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1989172	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2268987	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2300881	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300884	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2372993	0.87[ASN][1000 genomes]
rs3770757	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4581878	0.82[ASN][1000 genomes]
rs4670194	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4670195	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670688	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4670689	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57361399	0.90[ASN][1000 genomes]
rs6544066	0.93[ASN][1000 genomes]
rs67467920	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71398224	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72792829	0.80[ASN][1000 genomes]
rs74177070	0.84[ASN][1000 genomes]
rs7568510	0.91[ASN][1000 genomes]
rs7570547	0.89[ASN][1000 genomes]
rs7584565	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37553800-37562200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:37554000-37557800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr2:37555200-37557400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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