Variant report

Variant	rs56781599
Chromosome Location	chr6:13349922-13349923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13339419..13342239-chr6:13348403..13350162,2	MCF-7	breast:
2	chr6:13342922..13344716-chr6:13347876..13350302,2	K562	blood:
3	chr6:13348758..13351407-chr6:13355309..13358400,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16873767	1.00[EUR][1000 genomes]
rs16873768	1.00[EUR][1000 genomes]
rs55710269	1.00[AMR][1000 genomes]
rs55753088	1.00[EUR][1000 genomes]
rs56032676	1.00[AMR][1000 genomes]
rs56154949	1.00[EUR][1000 genomes]
rs56173882	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57618556	1.00[AMR][1000 genomes]
rs58050056	1.00[EUR][1000 genomes]
rs58453491	1.00[AMR][1000 genomes]
rs58859488	1.00[AMR][1000 genomes]
rs60507375	1.00[AMR][1000 genomes]
rs60623165	1.00[AMR][1000 genomes]
rs60715176	1.00[EUR][1000 genomes]
rs61020658	1.00[AMR][1000 genomes]
rs6908313	1.00[AMR][1000 genomes]
rs6929987	1.00[EUR][1000 genomes]
rs73362928	1.00[AMR][1000 genomes]
rs73362935	1.00[AMR][1000 genomes]
rs73362973	1.00[AMR][1000 genomes]
rs73723203	1.00[EUR][1000 genomes]
rs73723248	1.00[AMR][1000 genomes]
rs73723251	1.00[AMR][1000 genomes]
rs73723268	1.00[EUR][1000 genomes]
rs73725633	1.00[AMR][1000 genomes]
rs73725634	1.00[EUR][1000 genomes]
rs73725638	1.00[AMR][1000 genomes]
rs73725639	1.00[AMR][1000 genomes]
rs73725645	1.00[AMR][1000 genomes]
rs73725652	1.00[EUR][1000 genomes]
rs7747808	1.00[EUR][1000 genomes]
rs9473686	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13337200-13351200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:13343200-13350800	Weak transcription	Right Atrium	heart
3	chr6:13346800-13355400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:13347200-13354200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:13348600-13350000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:13348600-13350400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:13348600-13352000	Enhancers	NHEK	skin
8	chr6:13349200-13350400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:13349200-13350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:13349200-13353800	Weak transcription	K562	blood
11	chr6:13349200-13354200	Weak transcription	Esophagus	oesophagus
12	chr6:13349800-13350600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:13349800-13350800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:13349800-13352000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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