Variant report

Variant	rs56785389
Chromosome Location	chr11:76298405-76298406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10219259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10501423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236788	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12273530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12274380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12276178	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12280432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12281497	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12286370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12286377	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28559296	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57046912	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57873830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58019654	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61324790	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71469525	0.89[EUR][1000 genomes]
rs73495480	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76291200-76299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:76291600-76299800	Weak transcription	Lung	lung
3	chr11:76294800-76299600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:76298200-76299400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:76298200-76300800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:76298200-76303200	Enhancers	Placenta	Placenta
7	chr11:76298200-76305000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr11:76298400-76299200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:76298400-76299600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr11:76298400-76301400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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