Variant report

Variant	rs56791796
Chromosome Location	chr14:70027921-70027922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf162-2	chr14:70027736-70028187	NONHSAT037530

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1957369	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2332094	0.82[AMR][1000 genomes]
rs4899303	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899304	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902728	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55727771	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55817110	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55923041	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56249045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57769796	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61980683	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61980684	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61980693	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61980724	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982438	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61982440	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6573892	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7141009	0.89[ASN][1000 genomes]
rs7151003	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8006991	0.82[AMR][1000 genomes]
rs873176	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510642	chr14:69983293-70030335	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv564970	chr14:70000399-70040161	Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv94	chr14:70002365-70030415	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1334	chr14:70002365-70032641	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2760340	chr14:70013752-70032826	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv564980	chr14:70020319-70028547	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv564990	chr14:70020485-70028547	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv1825293	chr14:70020620-70039587	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70025400-70029800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:70025800-70028000	Enhancers	Fetal Brain Male	brain
3	chr14:70025800-70028200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:70025800-70028400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:70026000-70028200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:70026400-70028600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:70026600-70028000	Enhancers	Fetal Brain Female	brain
8	chr14:70027000-70028000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:70027000-70028000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:70027000-70028000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:70027000-70029000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:70027000-70029400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:70027600-70028000	Enhancers	Brain Anterior Caudate	brain
14	chr14:70027600-70028000	Enhancers	Brain Hippocampus Middle	brain
15	chr14:70027800-70028000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:70027800-70028600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:70027800-70029400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:70027800-70036800	Weak transcription	Brain Germinal Matrix	brain

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