Variant report

Variant	rs567951442
Chromosome Location	chr3:88050341-88050342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv536635	chr3:88049304-88088520	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88046800-88054400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:88048600-88054200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:88049800-88050400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:88049800-88050400	Active TSS	Right Atrium	heart
5	chr3:88049800-88050600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:88049800-88050600	Active TSS	Brain Anterior Caudate	brain
7	chr3:88049800-88050600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr3:88049800-88050600	Active TSS	Brain Substantia Nigra	brain
9	chr3:88049800-88050600	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr3:88049800-88050600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr3:88050000-88050400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:88050000-88050400	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr3:88050000-88050400	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr3:88050000-88050400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:88050000-88050400	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr3:88050000-88050400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:88050000-88050400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:88050000-88050400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:88050000-88050400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:88050000-88050400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:88050000-88050400	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr3:88050000-88050400	Flanking Active TSS	Liver	Liver
23	chr3:88050000-88050400	Active TSS	Brain Hippocampus Middle	brain
24	chr3:88050000-88050400	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr3:88050000-88050400	Active TSS	Fetal Brain Female	brain
26	chr3:88050000-88050400	Enhancers	Fetal Heart	heart
27	chr3:88050000-88050400	Active TSS	Fetal Lung	lung
28	chr3:88050000-88050400	Active TSS	Fetal Stomach	stomach
29	chr3:88050000-88050400	Active TSS	Left Ventricle	heart
30	chr3:88050000-88050400	Active TSS	Psoas Muscle	Psoas
31	chr3:88050000-88050400	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr3:88050000-88050400	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr3:88050000-88050400	Active TSS	Rectal Smooth Muscle	rectum
34	chr3:88050000-88050400	Active TSS	Stomach Smooth Muscle	stomach
35	chr3:88050000-88050400	Flanking Active TSS	HMEC	breast
36	chr3:88050000-88050400	Bivalent/Poised TSS	HSMMtube	muscle
37	chr3:88050000-88050400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
38	chr3:88050000-88050400	Active TSS	NH-A	brain
39	chr3:88050000-88050400	Active TSS	Osteobl	bone
40	chr3:88050000-88050600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:88050000-88050600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:88050000-88050600	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr3:88050000-88050600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:88050000-88050600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:88050000-88050600	Active TSS	Aorta	Aorta
46	chr3:88050000-88050600	Active TSS	Brain Angular Gyrus	brain
47	chr3:88050000-88050600	Active TSS	Brain Cingulate Gyrus	brain
48	chr3:88050000-88050600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:88050000-88050600	Active TSS	Colon Smooth Muscle	Colon
50	chr3:88050000-88050600	Active TSS	Skeletal Muscle Female	skeletal muscle

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