Variant report

Variant	rs56799360
Chromosome Location	chr1:215631404-215631405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215628691..215630584-chr1:215630925..215633155,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10465665	1.00[EUR][1000 genomes]
rs10864176	1.00[EUR][1000 genomes]
rs11120553	1.00[EUR][1000 genomes]
rs11120555	1.00[EUR][1000 genomes]
rs11120556	1.00[EUR][1000 genomes]
rs11120567	0.85[AMR][1000 genomes]
rs11120568	0.85[AMR][1000 genomes]
rs11120570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120571	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120572	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11120573	1.00[EUR][1000 genomes]
rs11120574	1.00[EUR][1000 genomes]
rs12061570	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12074526	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076291	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12077050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077775	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12078628	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079873	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12080017	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12093762	0.85[AMR][1000 genomes]
rs12094048	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095159	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs13374480	1.00[EUR][1000 genomes]
rs13374655	1.00[EUR][1000 genomes]
rs17024751	1.00[EUR][1000 genomes]
rs17024855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911547	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082520	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4082521	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4265403	1.00[EUR][1000 genomes]
rs57501351	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59473177	1.00[EUR][1000 genomes]
rs60597792	1.00[EUR][1000 genomes]
rs61070702	1.00[EUR][1000 genomes]
rs61272547	1.00[EUR][1000 genomes]
rs6678266	1.00[EUR][1000 genomes]
rs6690170	1.00[EUR][1000 genomes]
rs6695816	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73091976	1.00[EUR][1000 genomes]
rs73091981	1.00[EUR][1000 genomes]
rs73091996	1.00[EUR][1000 genomes]
rs7516768	1.00[EUR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv945287	chr1:215627807-215645387	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215630600-215633000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:215631000-215632000	Enhancers	NH-A	brain
3	chr1:215631200-215632400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:215631400-215632000	Enhancers	Cortex derived primary cultured neurospheres	brain

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