Variant report

Variant	rs568029501
Chromosome Location	chr9:100670594-100670595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100670192..100672522-chr9:100853837..100856499,2	K562	blood:
2	chr9:100667967..100674161-chr9:100680279..100686236,11	K562	blood:
3	chr9:100665233..100671095-chr9:100679720..100686341,8	MCF-7	breast:
4	chr9:100668446..100670680-chr9:100684264..100686164,2	MCF-7	breast:
5	chr9:100668512..100673720-chr9:100674176..100679549,8	K562	blood:
6	chr9:100662130..100664191-chr9:100669480..100671871,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000201830	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv525113	chr9:100669799-100686815	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100656800-100672400	Weak transcription	Stomach Mucosa	stomach
2	chr9:100658200-100671600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:100658400-100671600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:100658600-100671600	Weak transcription	Ovary	ovary
5	chr9:100658600-100671600	Weak transcription	Small Intestine	intestine
6	chr9:100658600-100672200	Weak transcription	Esophagus	oesophagus
7	chr9:100658800-100681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:100660200-100671200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:100662800-100684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:100663000-100672200	Weak transcription	Colonic Mucosa	Colon
11	chr9:100663200-100671600	Weak transcription	HSMMtube	muscle
12	chr9:100663200-100671800	Weak transcription	NH-A	brain
13	chr9:100663200-100672000	Weak transcription	HepG2	liver
14	chr9:100663200-100672200	Weak transcription	HSMM	muscle
15	chr9:100663400-100671200	Weak transcription	Brain Angular Gyrus	brain
16	chr9:100663400-100671600	Weak transcription	NHDF-Ad	bronchial
17	chr9:100663400-100672600	Weak transcription	A549	lung
18	chr9:100663600-100671000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:100664000-100673200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:100664400-100672200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:100665400-100671600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:100665400-100679000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:100665600-100671000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:100665600-100671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:100665600-100678200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:100665800-100671800	Weak transcription	HMEC	breast
27	chr9:100666200-100671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:100666600-100675400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:100666600-100676000	Strong transcription	Fetal Intestine Large	intestine
30	chr9:100666800-100675800	Strong transcription	Fetal Stomach	stomach
31	chr9:100667000-100675800	Strong transcription	Fetal Intestine Small	intestine
32	chr9:100667200-100679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:100667200-100684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:100667400-100671000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:100667400-100671000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:100667400-100671600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr9:100667400-100671600	Weak transcription	NHEK	skin
38	chr9:100667400-100672200	Weak transcription	Fetal Lung	lung
39	chr9:100667600-100671200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:100667600-100671800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr9:100667600-100672000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr9:100667800-100671600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:100667800-100671600	Weak transcription	Osteobl	bone
44	chr9:100667800-100672200	Weak transcription	Psoas Muscle	Psoas
45	chr9:100667800-100674000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:100668000-100671600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:100668000-100672400	Weak transcription	Fetal Kidney	kidney
48	chr9:100668800-100671600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:100669000-100671000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:100669000-100674600	Weak transcription	HUVEC	blood vessel

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