Variant report

Variant	rs568103678
Chromosome Location	chr7:101563306-101563307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101556253..101559058-chr7:101561053..101564216,4	K562	blood:
2	chr7:101555421..101558388-chr7:101562750..101564746,2	MCF-7	breast:
3	chr7:101563285..101566884-chr7:101569000..101572598,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101544000-101569800	Weak transcription	HMEC	breast
2	chr7:101544200-101579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:101555400-101565600	Weak transcription	Stomach Mucosa	stomach
4	chr7:101555400-101567400	Weak transcription	HUVEC	blood vessel
5	chr7:101556000-101572600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr7:101556400-101566800	Weak transcription	NHDF-Ad	bronchial
7	chr7:101557200-101565600	Weak transcription	NH-A	brain
8	chr7:101557400-101566000	Weak transcription	Aorta	Aorta
9	chr7:101557400-101566400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:101557400-101573600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:101557600-101565800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:101557600-101568200	Weak transcription	Brain Anterior Caudate	brain
13	chr7:101557600-101571200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:101558000-101564600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:101558000-101565600	Strong transcription	Fetal Intestine Small	intestine
16	chr7:101558000-101567800	Strong transcription	Dnd41	blood
17	chr7:101558000-101570200	Strong transcription	Fetal Stomach	stomach
18	chr7:101558200-101563400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:101558200-101563400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:101558200-101563400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:101558200-101563400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:101558200-101563400	Strong transcription	Thymus	Thymus
23	chr7:101558200-101564600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:101558200-101570400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr7:101558400-101563400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:101558400-101563400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr7:101558400-101563400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:101558400-101564000	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:101558400-101565600	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:101558400-101567000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr7:101558600-101563400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:101558600-101564000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr7:101558600-101567000	Weak transcription	Psoas Muscle	Psoas
34	chr7:101558600-101577800	Weak transcription	Brain Angular Gyrus	brain
35	chr7:101558800-101563400	Strong transcription	Fetal Intestine Large	intestine
36	chr7:101558800-101564400	Strong transcription	Osteobl	bone
37	chr7:101558800-101565000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:101559000-101563400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:101559000-101563400	Strong transcription	Esophagus	oesophagus
40	chr7:101559000-101565800	Weak transcription	Ovary	ovary
41	chr7:101559200-101563400	Strong transcription	Placenta	Placenta
42	chr7:101559200-101563400	Strong transcription	HepG2	liver
43	chr7:101559200-101564600	Strong transcription	Fetal Muscle Leg	muscle
44	chr7:101559400-101563400	Strong transcription	Liver	Liver
45	chr7:101559400-101565600	Weak transcription	Small Intestine	intestine
46	chr7:101560000-101568200	Weak transcription	Brain Substantia Nigra	brain
47	chr7:101560000-101577000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:101560400-101568600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:101561000-101563400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:101561000-101564400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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