Variant report

Variant	rs568198560
Chromosome Location	chr5:62073641-62073642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:62073623-62073673	AG09319	gingival:	n/a
2	chr5:62073623-62073673	ovcar-3	ovarian:	n/a
3	chr5:62073623-62073673	HIPEpiC	eye:	n/a
4	chr5:62073623-62073673	HCM	heart:	n/a
5	chr5:62073623-62073673	PrEC	prostate:	n/a
6	chr5:62073623-62073673	GM19239	blood:	n/a
7	chr5:62073623-62073673	BJ	skin:	n/a
8	chr5:62073623-62073673	HRPEpiC	eye:	n/a
9	chr5:62073623-62073673	LNCaP	prostate:	n/a
10	chr5:62073623-62073673	AG04450	lung:	fetal
11	chr5:62073623-62073673	H1-hESC	embryonic stem cell:	embryo
12	chr5:62073623-62073673	CMK	blood:	n/a
13	chr5:62073623-62073673	HRE	kidney:	n/a
14	chr5:62073623-62073673	AG04449	skin:	fetal
15	chr5:62073623-62073673	HCT-116	colon:	n/a
16	chr5:62073623-62073673	GM12892	blood:	n/a
17	chr5:62073623-62073673	HCPEpiC	choroid plexus:	n/a
18	chr5:62073623-62073673	HRCEpiC	kidney:	n/a
19	chr5:62073623-62073673	T-47D	breast:	n/a
20	chr5:62073623-62073673	SKMC	muscle:	n/a
21	chr5:62073623-62073673	ProgFib	skin:	n/a
22	chr5:62073623-62073673	HPAEpiC	pulmonary alveolar:	n/a
23	chr5:62073623-62073673	NH-A	brain:	n/a
24	chr5:62073623-62073673	SAEC	small airway:	n/a
25	chr5:62073623-62073673	HUVEC	blood vessel:	n/a
26	chr5:62073623-62073673	SK-N-SH	brain:	n/a
27	chr5:62073623-62073673	BE2_C	brain:	n/a
28	chr5:62073623-62073673	Hela-S3	cervix:	n/a
29	chr5:62073623-62073673	A549	lung:	n/a
30	chr5:62073623-62073673	HL-60	blood:	n/a
31	chr5:62073623-62073673	Hepatocyte	liver:	n/a
32	chr5:62073623-62073673	MCF10A-Er-Src	breast:	n/a
33	chr5:62073623-62073673	AoSMC	blood vessel:	n/a
34	chr5:62073623-62073673	ECC-1	luminal epithelium:	n/a
35	chr5:62073623-62073673	HepG2	liver:	n/a
36	chr5:62073623-62073673	RPTEC	kidney:	n/a
37	chr5:62073623-62073673	SK-N-SH_RA	brain:	n/a
38	chr5:62073623-62073673	Caco-2	colon:	n/a
39	chr5:62073623-62073673	PANC-1	pancreas:	n/a
40	chr5:62073623-62073673	HMEC	breast:	n/a
41	chr5:62073623-62073673	NB4	blood:	n/a
42	chr5:62073623-62073673	Jurkat	blood:	n/a
43	chr5:62073623-62073673	SK-N-MC	brain:	n/a
44	chr5:62073623-62073673	MCF-7	breast:	n/a
45	chr5:62073623-62073673	GM06990	blood:	n/a
46	chr5:62073623-62073673	GM12891	blood:	n/a
47	chr5:62073623-62073673	HCF	heart:	n/a
48	chr5:62073623-62073673	HAEpiC	amniotic membrane:	n/a
49	chr5:62073623-62073673	HEEpiC	esophagus:	n/a
50	chr5:62073623-62073673	IMR90	lung:	fetal

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:62068406..62072262-chr5:62073628..62078748,5	K562	blood:

No data

Variant related genes	Relation type
ISCA1P1	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763458	chr5:61852234-62157166	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022817	chr5:61853619-62149259	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv948334	chr5:61891622-62197219	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1022825	chr5:62025524-62874332	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1033401	chr5:62025524-62875830	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1035049	chr5:62027995-62875830	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2757118	chr5:62031365-62102343	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2759346	chr5:62031365-62102343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv10706	chr5:62039724-62105414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv881738	chr5:62039960-62110910	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv881739	chr5:62042182-62110910	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv34525	chr5:62047644-62102344	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv881740	chr5:62048009-62110910	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2752896	chr5:62073197-62846973	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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