Variant report
| Variant | rs56823002 |
|---|---|
| Chromosome Location | chr6:132941039-132941040 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| TAAR2 | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1081075 | 0.96[ASN][1000 genomes] |
| rs1081076 | 0.94[ASN][1000 genomes] |
| rs1081077 | 0.96[ASN][1000 genomes] |
| rs1081078 | 0.94[ASN][1000 genomes] |
| rs4130812 | 1.00[AFR][1000 genomes] |
| rs55687137 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58858474 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58942161 | 0.82[ASN][1000 genomes] |
| rs59148659 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73555844 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73555846 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73555851 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73555853 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73555855 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73555862 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73775132 | 0.96[ASN][1000 genomes] |
| rs8192647 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532069 | chr6:132776411-133462292 | Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015742 | chr6:132933666-133285852 | Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 71 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
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