Variant report

Variant	rs56836683
Chromosome Location	chr11:47609061-47609062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1474056	0.82[AFR][1000 genomes]
rs4147730	0.96[AFR][1000 genomes]
rs57828885	0.84[AFR][1000 genomes]
rs7931089	0.82[AFR][1000 genomes]
rs7935802	1.00[AMR][1000 genomes]
rs7939069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47601400-47611800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:47601400-47613400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:47602200-47610400	Strong transcription	Fetal Brain Female	brain
4	chr11:47602400-47609200	Strong transcription	Primary B cells from cord blood	blood
5	chr11:47602400-47609800	Strong transcription	Fetal Stomach	stomach
6	chr11:47602600-47610000	Strong transcription	Brain Germinal Matrix	brain
7	chr11:47603800-47612400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:47604000-47612000	Weak transcription	Small Intestine	intestine
9	chr11:47604400-47610800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:47605000-47611000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:47605600-47610800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:47605800-47610200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:47605800-47610200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:47605800-47610200	Weak transcription	Fetal Kidney	kidney
15	chr11:47605800-47610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:47606000-47609200	Weak transcription	HSMM	muscle
17	chr11:47606000-47610400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:47606000-47611000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:47606000-47611400	Weak transcription	HMEC	breast
20	chr11:47606000-47614200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:47606200-47609200	Weak transcription	K562	blood
22	chr11:47606200-47609200	Weak transcription	NHLF	lung
23	chr11:47606200-47609400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:47606200-47610200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:47606200-47610800	Weak transcription	Fetal Heart	heart
26	chr11:47606200-47610800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:47606200-47611200	Weak transcription	Colonic Mucosa	Colon
28	chr11:47606200-47611400	Weak transcription	NH-A	brain
29	chr11:47606200-47612000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:47606200-47612600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:47606200-47614200	Weak transcription	A549	lung
32	chr11:47606200-47614600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:47606400-47610600	Weak transcription	NHEK	skin
34	chr11:47606400-47610600	Weak transcription	Osteobl	bone
35	chr11:47606400-47612000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:47606400-47612400	Weak transcription	GM12878-XiMat	blood
37	chr11:47606600-47613400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:47606800-47610000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:47606800-47610800	Weak transcription	HUVEC	blood vessel
40	chr11:47606800-47611400	Weak transcription	Gastric	stomach
41	chr11:47606800-47611600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:47606800-47613200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:47606800-47613600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:47606800-47613600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:47607000-47609200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:47607000-47609400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:47607000-47609600	Weak transcription	Liver	Liver
48	chr11:47607000-47610200	Weak transcription	Ovary	ovary
49	chr11:47607000-47610600	Weak transcription	Fetal Lung	lung
50	chr11:47607000-47610600	Weak transcription	Placenta Amnion	Placenta Amnion

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