Variant report

Variant	rs56848015
Chromosome Location	chr1:210808537-210808538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56963573	1.00[AMR][1000 genomes]
rs73063642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73065524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156087	1.00[AMR][1000 genomes]
rs74156834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:210801600-210823000	Weak transcription	Aorta	Aorta
3	chr1:210802000-210815000	Weak transcription	Pancreas	Pancrea
4	chr1:210805600-210808600	Enhancers	Brain Anterior Caudate	brain
5	chr1:210806200-210808600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:210807200-210816000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:210807800-210808600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:210807800-210808600	Enhancers	HSMMtube	muscle
9	chr1:210807800-210820400	Weak transcription	HSMM	muscle
10	chr1:210808000-210808600	Weak transcription	Right Atrium	heart
11	chr1:210808200-210808800	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:210808400-210809000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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