Variant report
Variant | rs568481213 |
---|---|
Chromosome Location | chr6:55038671-55038672 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:61)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:55038641-55038691 | HEK293 | kidney: | embryo |
2 | chr6:55038641-55038691 | NH-A | brain: | n/a |
3 | chr6:55038641-55038691 | GM19239 | blood: | n/a |
4 | chr6:55038641-55038691 | HEEpiC | esophagus: | n/a |
5 | chr6:55038641-55038691 | HCF | heart: | n/a |
6 | chr6:55038641-55038691 | MCF-7 | breast: | n/a |
7 | chr6:55038641-55038691 | PANC-1 | pancreas: | n/a |
8 | chr6:55038641-55038691 | HCM | heart: | n/a |
9 | chr6:55038641-55038691 | AG10803 | skin: | n/a |
10 | chr6:55038641-55038691 | HepG2 | liver: | n/a |
11 | chr6:55038641-55038691 | Jurkat | blood: | n/a |
12 | chr6:55038641-55038691 | ovcar-3 | ovarian: | n/a |
13 | chr6:55038641-55038691 | HRE | kidney: | n/a |
14 | chr6:55038641-55038691 | K562 | blood: | n/a |
15 | chr6:55038641-55038691 | GM12892 | blood: | n/a |
16 | chr6:55038641-55038691 | AoSMC | blood vessel: | n/a |
17 | chr6:55038641-55038691 | HMEC | breast: | n/a |
18 | chr6:55038641-55038691 | AG04449 | skin: | fetal |
19 | chr6:55038641-55038691 | NB4 | blood: | n/a |
20 | chr6:55038641-55038691 | ProgFib | skin: | n/a |
21 | chr6:55038641-55038691 | HL-60 | blood: | n/a |
22 | chr6:55038641-55038691 | RPTEC | kidney: | n/a |
23 | chr6:55038641-55038691 | IMR90 | lung: | fetal |
24 | chr6:55038641-55038691 | A549 | lung: | n/a |
25 | chr6:55038641-55038691 | AG09319 | gingival: | n/a |
26 | chr6:55038641-55038691 | HNPCEpiC | eye: | n/a |
27 | chr6:55038641-55038691 | SAEC | small airway: | n/a |
28 | chr6:55038641-55038691 | LNCaP | prostate: | n/a |
29 | chr6:55038641-55038691 | AG04450 | lung: | fetal |
30 | chr6:55038641-55038691 | HPAEpiC | pulmonary alveolar: | n/a |
31 | chr6:55038641-55038691 | BJ | skin: | n/a |
32 | chr6:55038641-55038691 | SK-N-MC | brain: | n/a |
33 | chr6:55038641-55038691 | NT2-D1 | testis: | n/a |
34 | chr6:55038641-55038691 | HRCEpiC | kidney: | n/a |
35 | chr6:55038641-55038691 | U87 | brain: | n/a |
36 | chr6:55038641-55038691 | HAEpiC | amniotic membrane: | n/a |
37 | chr6:55038641-55038691 | Caco-2 | colon: | n/a |
38 | chr6:55038641-55038691 | PrEC | prostate: | n/a |
39 | chr6:55038641-55038691 | GM12878 | blood: | n/a |
40 | chr6:55038641-55038691 | SK-N-SH | brain: | n/a |
41 | chr6:55038641-55038691 | Hepatocyte | liver: | n/a |
42 | chr6:55038641-55038691 | BE2_C | brain: | n/a |
43 | chr6:55038641-55038691 | ECC-1 | luminal epithelium: | n/a |
44 | chr6:55038641-55038691 | SK-N-SH_RA | brain: | n/a |
45 | chr6:55038641-55038691 | T-47D | breast: | n/a |
46 | chr6:55038641-55038691 | NHBE | bronchial: | n/a |
47 | chr6:55038641-55038691 | GM12891 | blood: | n/a |
48 | chr6:55038641-55038691 | HRPEpiC | eye: | n/a |
49 | chr6:55038641-55038691 | NHDF-neo | bronchial: | n/a |
50 | chr6:55038641-55038691 | GM06990 | blood: | n/a |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
HCRTR2 | CpG island |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1016461 | chr6:55038131-55129663 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |